FC923255 | Citrus Genome Database

Overview


Name	FC923255
Unique Name	FC923255
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	745

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOSE (Adenylyl-sulfate kinase OS=Escherichia coli (strain SE11) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOLU (Adenylyl-sulfate kinase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOLI (Adenylyl-sulfate kinase OS=Escherichia coli (strain K12) GN=cysC PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOLC (Adenylyl-sulfate kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOL6 (Adenylyl-sulfate kinase OS=Escherichia coli O6 GN=cysC PE=3 SV=3)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOL5 (Adenylyl-sulfate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOK1 (Adenylyl-sulfate kinase OS=Escherichia coli O1:K1 / APEC GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOHS (Adenylyl-sulfate kinase OS=Escherichia coli O9:H4 (strain HS) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECODH (Adenylyl-sulfate kinase OS=Escherichia coli (strain K12 / DH10B) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECOBW (Adenylyl-sulfate kinase OS=Escherichia coli (strain K12 / BW2952) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

The following BLAST results are available for this feature:

BLAST of FC923255 vs. ExPASy Swiss-Prot

BLAST of FC923255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
CYSC_ECOSE	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECOLU	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O17:K5...	[more]
CYSC_ECOLI	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECOLC	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECOL6	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O6 GN=...	[more]
CYSC_ECOL5	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O6:K15...	[more]
CYSC_ECOK1	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O1:K1 ...	[more]
CYSC_ECOHS	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O9:H4 ...	[more]
CYSC_ECODH	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECOBW	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]

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Properties


Property Name	Value
Genbank description	C31702G02EF StrClemenN Citrus clementina cDNA clone C31702G02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923255 ID=FC923255; Name=FC923255; organism=Citrus clementina; type=EST; length=745bp
GACAACTGCCGGCATGGACTGAACCGTGATCTAAGTTTTAAGGCAGAAGA
TCGTGTGGAAAACATACGCAGGATTGAAAAGATCGAGATGCCTGCCGTTC
AATGTTGCCAGAAGGAGATTTCATTGAGGTGTTCATGGATGTGCCACTTC
AAGTGTGTGAGGCAAGGGACCCAAAGGGCCTTTACAAGCTTGCACGAGAA
GGGAAGGTTTTACTGGGATTGATGATCCATATGAACCACCATTAAACTGT
GAGATAGTACTAAAACAGACGGGAGATGACTGTCCTTCACCGGCTGATAT
GGTTGAAACTGTGGTATCTTACCTGGATGATAATGGCTTCCTGCGGGCCT
AATTTGAAGAGAAAGGTCTCAGCTCTTGGTTTCCATTGCCTTTGGTCACC
TGCAATACTTTGAGGTATCGACAAAAATCATGGTACGATCCAGTAAGGAA
ACTGATTGTTTCCTGCATCTGTAGCGACAATAAATGTCTGGCACTTTAAT
TACTCGATCGAGTAGTTGACGTCAGTGCCAAGCAAGTTGCATAGCGTTTC
GCGTCTTTAATTCAGGTTTGTTTTGGAATAAGTTATATGTTCATAGGGTT
GGGGATCGATGTAAATCAGTGTCATGCAGCATTAGAATAAAAGTTGTCTC
AGGTTTGCAAATTTCGATTGTACACGTACCCAACCCCGGCATCTTTGTAT
TACCATATTTGTGATAAGGAGCCAAGCTCTTACAGGCGTCTCATT