FC923255 | Citrus Genome Database

Overview


Name	FC923255
Unique Name	FC923255
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	745

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO8A (Adenylyl-sulfate kinase OS=Escherichia coli O8 (strain IAI1) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO81 (Adenylyl-sulfate kinase OS=Escherichia coli O81 (strain ED1a) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO7I (Adenylyl-sulfate kinase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO5E (Adenylyl-sulfate kinase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO57 (Adenylyl-sulfate kinase OS=Escherichia coli O157:H7 GN=cysC PE=3 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO55 (Adenylyl-sulfate kinase OS=Escherichia coli (strain 55989 / EAEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO45 (Adenylyl-sulfate kinase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO27 (Adenylyl-sulfate kinase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_ECO24 (Adenylyl-sulfate kinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysC PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.002e-13
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R  + EG FIEVF+D PL +CEARDPKGLYK AR G++
Sbjct:  114 ERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGEL 156

HSP 2 Score: 36.1946 bits (82), Expect = 8.002e-13
Identity = 16/28 (57.14%), Postives = 19/28 (67.86%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL  DL F   DR ENIRR+ ++
Sbjct:   65 DNVRHGLCSDLGFSDADRKENIRRVGEV 92

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: NODQ_RHIS3 (Bifunctional enzyme nodQ OS=Rhizobium sp. (strain N33) GN=nodQ PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.001e-12
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +R   R ++ +G+F+EVF+D P + C  RDPKGLY  A  G++
Sbjct:  549 ERRMARELMADGEFVEVFVDTPFEECARRDPKGLYARALNGEI 591

HSP 2 Score: 44.669 bits (104), Expect = 1.001e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGLNRDL F   DRVENIRR+ ++
Sbjct:  500 DNVRHGLNRDLGFTEADRVENIRRVAEV 527

The following BLAST results are available for this feature:

BLAST of FC923255 vs. ExPASy Swiss-Prot

BLAST of FC923255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
CYSC_ECO8A	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O8 (st...	[more]
CYSC_ECO81	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O81 (s...	[more]
CYSC_ECO7I	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O7:K1 ...	[more]
CYSC_ECO5E	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O157:H...	[more]
CYSC_ECO57	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O157:H...	[more]
CYSC_ECO55	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli (strai...	[more]
CYSC_ECO45	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O45:K1...	[more]
CYSC_ECO27	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O127:H...	[more]
CYSC_ECO24	8.002e-13	60.47	Adenylyl-sulfate kinase OS=Escherichia coli O139:H...	[more]
NODQ_RHIS3	1.001e-12	44.19	Bifunctional enzyme nodQ OS=Rhizobium sp. (strain ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31702G02EF StrClemenN Citrus clementina cDNA clone C31702G02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923255 ID=FC923255; Name=FC923255; organism=Citrus clementina; type=EST; length=745bp
GACAACTGCCGGCATGGACTGAACCGTGATCTAAGTTTTAAGGCAGAAGA
TCGTGTGGAAAACATACGCAGGATTGAAAAGATCGAGATGCCTGCCGTTC
AATGTTGCCAGAAGGAGATTTCATTGAGGTGTTCATGGATGTGCCACTTC
AAGTGTGTGAGGCAAGGGACCCAAAGGGCCTTTACAAGCTTGCACGAGAA
GGGAAGGTTTTACTGGGATTGATGATCCATATGAACCACCATTAAACTGT
GAGATAGTACTAAAACAGACGGGAGATGACTGTCCTTCACCGGCTGATAT
GGTTGAAACTGTGGTATCTTACCTGGATGATAATGGCTTCCTGCGGGCCT
AATTTGAAGAGAAAGGTCTCAGCTCTTGGTTTCCATTGCCTTTGGTCACC
TGCAATACTTTGAGGTATCGACAAAAATCATGGTACGATCCAGTAAGGAA
ACTGATTGTTTCCTGCATCTGTAGCGACAATAAATGTCTGGCACTTTAAT
TACTCGATCGAGTAGTTGACGTCAGTGCCAAGCAAGTTGCATAGCGTTTC
GCGTCTTTAATTCAGGTTTGTTTTGGAATAAGTTATATGTTCATAGGGTT
GGGGATCGATGTAAATCAGTGTCATGCAGCATTAGAATAAAAGTTGTCTC
AGGTTTGCAAATTTCGATTGTACACGTACCCAACCCCGGCATCTTTGTAT
TACCATATTTGTGATAAGGAGCCAAGCTCTTACAGGCGTCTCATT