FC923255 | Citrus Genome Database

Overview


Name	FC923255
Unique Name	FC923255
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	745

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHEB8 (Adenylyl-sulfate kinase OS=Shewanella baltica (strain OS185) GN=cysC PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.955e-12
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            ++RD+ R+  P   FIEV +  PL VCE RDPKGLY  AR G++
Sbjct:  109 EERDSIRARFPASQFIEVHVSTPLSVCEQRDPKGLYVKARSGEI 152

HSP 2 Score: 38.891 bits (89), Expect = 2.955e-12
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL +DL F  EDR EN+RR+ ++
Sbjct:   61 DNVRHGLCKDLGFTVEDRDENLRRVGEV 88

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHEB5 (Adenylyl-sulfate kinase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=cysC PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.955e-12
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            ++RD+ R+  P   FIEV +  PL VCE RDPKGLY  AR G++
Sbjct:  109 EERDSIRARFPTSQFIEVHVSTPLSVCEQRDPKGLYVKARSGEI 152

HSP 2 Score: 38.891 bits (89), Expect = 2.955e-12
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL +DL F  EDR EN+RR+ ++
Sbjct:   61 DNVRHGLCKDLGFTVEDRDENLRRVGEV 88

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHEB2 (Adenylyl-sulfate kinase OS=Shewanella baltica (strain OS223) GN=cysC PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 2.955e-12
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            ++RD+ R+  P   FIEV +  PL VCE RDPKGLY  AR G++
Sbjct:  109 EERDSIRARFPASQFIEVHVSTPLSVCEQRDPKGLYVKARSGEI 152

HSP 2 Score: 38.891 bits (89), Expect = 2.955e-12
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL +DL F  EDR EN+RR+ ++
Sbjct:   61 DNVRHGLCKDLGFTVEDRDENLRRVGEV 88

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_GEOSF (Adenylyl-sulfate kinase OS=Geobacter sp. (strain FRC-32) GN=cysC PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 2.955e-12
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +DR+  R++    +FIEVF++  L VCE+RDPKGLY+ AR G++
Sbjct:  113 EDRERVRALFEPAEFIEVFVNCDLAVCESRDPKGLYRKARSGEL 156

HSP 2 Score: 40.0466 bits (92), Expect = 2.955e-12
Identity = 18/28 (64.29%), Postives = 20/28 (71.43%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGLN DL F   DR ENIRRI ++
Sbjct:   65 DNIRHGLNSDLGFSEADRRENIRRIGEV 92

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_LACPL (Adenylyl-sulfate kinase OS=Lactobacillus plantarum GN=cysC PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.835e-12
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 3

Query:   81 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            DRD  R+ L   +FIEVF+D PL+VCE RD K LY  AR G++
Sbjct:  113 DRDKVRANLEVDEFIEVFVDTPLEVCEQRDVKQLYAKARRGEI 155

HSP 2 Score: 40.4318 bits (93), Expect = 3.835e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN R GLN++L F AEDR ENIRRI ++
Sbjct:   64 DNMRFGLNKNLGFSAEDREENIRRIGEV 91

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_PSEE4 (Adenylyl-sulfate kinase OS=Pseudomonas entomophila (strain L48) GN=cysC PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.835e-12
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            KDR   R +L E +++EVF+   L  CE RDPKGLY+ AR G++
Sbjct:  109 KDRHLVRQLLNEDEYVEVFLSTSLADCERRDPKGLYRKARAGEL 152

HSP 2 Score: 41.5874 bits (96), Expect = 3.835e-12
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN R GLN+DL F  +DRVENIRR+ ++
Sbjct:   61 DNVRQGLNKDLGFSEQDRVENIRRVGEV 88

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_SHEB9 (Adenylyl-sulfate kinase OS=Shewanella baltica (strain OS195) GN=cysC PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.838e-12
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            ++RD+ R+  P   FIEV +  PL VCE RDPKGLY  AR G++
Sbjct:  109 EERDSIRARFPVSQFIEVHVSTPLSVCEQRDPKGLYVKARSGEI 152

HSP 2 Score: 38.891 bits (89), Expect = 3.838e-12
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGL +DL F  EDR EN+RR+ ++
Sbjct:   61 DNVRHGLCKDLGFTVEDRDENLRRVGEV 88

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: PAPSS_URECA (Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase OS=Urechis caupo PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 4.802e-12
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 3

Query:   78 KDRDACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +DRD  RS+  +    F E F+D PL VCE RD KGLYK AR G++
Sbjct:  122 RDRDLARSLHEQAGLPFFECFVDTPLDVCEQRDVKGLYKKARAGQI 167

HSP 2 Score: 42.3578 bits (98), Expect = 4.802e-12
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGLN++L F  EDR ENIRRI ++
Sbjct:   74 DNVRHGLNKNLGFTQEDREENIRRISEV 101

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_BACLD (Adenylyl-sulfate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cysC PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.991e-12
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 3

Query:   78 KDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            +DR   R ++ E +F EV++   L  CE RDPKGLYK AR G++
Sbjct:  111 EDRGLVRQLVEEDEFHEVYVKCDLATCEERDPKGLYKKARNGEI 154

HSP 2 Score: 43.5134 bits (101), Expect = 4.991e-12
Identity = 19/28 (67.86%), Postives = 22/28 (78.57%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRIEKI 84
            DN RHGLN+DL F  EDR ENIRRI ++
Sbjct:   63 DNVRHGLNKDLGFSDEDRKENIRRIGEV 90

[Close]

BLAST of FC923255 vs. ExPASy Swiss-Prot
Match: CYSC_MICAN (Adenylyl-sulfate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=cysC PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.686e-12
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 3

Query:  114 GDFIEVFMDVPLQVCEARDPKGLYKLAREGKV 209
            G+F+EVF++ PL VCE RD KGLYK AR G++
Sbjct:  100 GNFVEVFVNAPLSVCEDRDVKGLYKRARAGEI 131

HSP 2 Score: 35.039 bits (79), Expect = 5.686e-12
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 2

Query:  203 EGFTGIDDPYEPPLNCEIVLKQTGDDCPSPADMVETVVSYLDDNGFL 343
            + FTGIDDPYEPP N E+   +   D  +  + V  V + L + G++
Sbjct:  132 KSFTGIDDPYEPPFNPEV---ECRTDLETLEESVAKVWNKLTELGYI 175

HSP 3 Score: 28.1054 bits (61), Expect = 5.686e-12
Identity = 14/25 (56.00%), Postives = 15/25 (60.00%), Query Frame = 1

Query:    1 DNCRHGLNRDLSFKAEDRVENIRRI 75
            D  R  L + L F  EDR ENIRRI
Sbjct:   42 DIVRTNLTKGLGFSKEDRDENIRRI 66

The following BLAST results are available for this feature:

BLAST of FC923255 vs. ExPASy Swiss-Prot

BLAST of FC923255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
CYSC_SHEB8	2.955e-12	52.27	Adenylyl-sulfate kinase OS=Shewanella baltica (str...	[more]
CYSC_SHEB5	2.955e-12	52.27	Adenylyl-sulfate kinase OS=Shewanella baltica (str...	[more]
CYSC_SHEB2	2.955e-12	52.27	Adenylyl-sulfate kinase OS=Shewanella baltica (str...	[more]
CYSC_GEOSF	2.955e-12	50.00	Adenylyl-sulfate kinase OS=Geobacter sp. (strain F...	[more]
CYSC_LACPL	3.835e-12	55.81	Adenylyl-sulfate kinase OS=Lactobacillus plantarum...	[more]
CYSC_PSEE4	3.835e-12	50.00	Adenylyl-sulfate kinase OS=Pseudomonas entomophila...	[more]
CYSC_SHEB9	3.838e-12	52.27	Adenylyl-sulfate kinase OS=Shewanella baltica (str...	[more]
PAPSS_URECA	4.802e-12	52.17	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate...	[more]
CYSC_BACLD	4.991e-12	47.73	Adenylyl-sulfate kinase OS=Bacillus licheniformis ...	[more]
CYSC_MICAN	5.686e-12	62.50	Adenylyl-sulfate kinase OS=Microcystis aeruginosa ...	[more]

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Properties


Property Name	Value
Genbank description	C31702G02EF StrClemenN Citrus clementina cDNA clone C31702G02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923255 ID=FC923255; Name=FC923255; organism=Citrus clementina; type=EST; length=745bp
GACAACTGCCGGCATGGACTGAACCGTGATCTAAGTTTTAAGGCAGAAGA
TCGTGTGGAAAACATACGCAGGATTGAAAAGATCGAGATGCCTGCCGTTC
AATGTTGCCAGAAGGAGATTTCATTGAGGTGTTCATGGATGTGCCACTTC
AAGTGTGTGAGGCAAGGGACCCAAAGGGCCTTTACAAGCTTGCACGAGAA
GGGAAGGTTTTACTGGGATTGATGATCCATATGAACCACCATTAAACTGT
GAGATAGTACTAAAACAGACGGGAGATGACTGTCCTTCACCGGCTGATAT
GGTTGAAACTGTGGTATCTTACCTGGATGATAATGGCTTCCTGCGGGCCT
AATTTGAAGAGAAAGGTCTCAGCTCTTGGTTTCCATTGCCTTTGGTCACC
TGCAATACTTTGAGGTATCGACAAAAATCATGGTACGATCCAGTAAGGAA
ACTGATTGTTTCCTGCATCTGTAGCGACAATAAATGTCTGGCACTTTAAT
TACTCGATCGAGTAGTTGACGTCAGTGCCAAGCAAGTTGCATAGCGTTTC
GCGTCTTTAATTCAGGTTTGTTTTGGAATAAGTTATATGTTCATAGGGTT
GGGGATCGATGTAAATCAGTGTCATGCAGCATTAGAATAAAAGTTGTCTC
AGGTTTGCAAATTTCGATTGTACACGTACCCAACCCCGGCATCTTTGTAT
TACCATATTTGTGATAAGGAGCCAAGCTCTTACAGGCGTCTCATT