FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.115e-30
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK+IYGRIVTIEYDPNRNAYICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.115e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            R EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RTEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI+SGTEVPIKMGNALPL+
Sbjct:   67 RNEKYIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 61/65 (93.85%), Postives = 65/65 (100.00%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA+IGDTIVSGT+VPIKMGNALPL+
Sbjct:   67 RNKKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGALIGDTIVSGTKVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDIYGRIVTIEYDPNRNAYIC IHYGDGEKRYILHPRGAIIGD IVSGTEVPIKMGNALPL+
Sbjct:   67 RNEKDIYGRIVTIEYDPNRNAYICFIHYGDGEKRYILHPRGAIIGDIIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.902e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI+SGTEVPIKMGNALPL+
Sbjct:   67 RNEKYIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLS
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.484e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RNANDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.244e-30
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDIYG+IVTIEYDPNRNAYICLIHYG GEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RNEKDIYGKIVTIEYDPNRNAYICLIHYGGGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.237e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RNEKDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2A_SOYBN1.115e-3095.3850S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RK2A_COFAR1.115e-3095.3850S ribosomal protein L2-A, chloroplastic OS=Coffe... [more]
RK2_POPTR1.902e-3095.3850S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_JASNU1.902e-3093.8550S ribosomal protein L2, chloroplastic OS=Jasminu... [more]
RK2_GOSBA1.902e-3095.3850S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2B_POPAL1.902e-3095.3850S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RK2_DIOEL2.484e-3096.9250S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2_CAPBU2.484e-3095.3850S ribosomal protein L2, chloroplastic OS=Capsell... [more]
RK2_MORIN3.244e-3093.8550S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_EUCGG4.237e-3095.3850S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]

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Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
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