FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            R++  I  R+  IEYDPNR+  I L+ Y DG+KRYI+ P+G  +GD + SG   PIK+GNALPL  +
Sbjct:   71 RDKFGIPARVAAIEYDPNRSPNIALLVYRDGDKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENI 137          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_BLOPB (50S ribosomal protein L2 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            RN+  I   I  +EYDPNR+A I L+ Y DGE RYIL P+   IGD I SG  VPIK GNALP+S +
Sbjct:   71 RNKDGISAVIKRLEYDPNRSANIALLSYRDGEYRYILAPKDVKIGDFISSGANVPIKPGNALPMSNI 137          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_BAUCH (50S ribosomal protein L2 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.027e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            RN+ +I  +I  IEYDPNR+A I L+ Y DGE+RYI+ P+G  +GD I+SG    IK GN LP+  +
Sbjct:   69 RNKDNIAAKIERIEYDPNRSANIALVLYQDGERRYIIAPKGLKVGDQIISGHHATIKTGNTLPIQNI 135          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_XYLFT (50S ribosomal protein L2 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            R+++ I  R+  IEYDPNR A+I L+ Y DGE+ YI+ P+G   GD I+SG  VPIK+GN+LPL
Sbjct:   69 RDKEAIPARVERIEYDPNRTAHIALLCYIDGERCYIIAPKGLKEGDKIISGPNVPIKLGNSLPL 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_XYLFM (50S ribosomal protein L2 OS=Xylella fastidiosa (strain M12) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            R+++ I  R+  IEYDPNR A+I L+ Y DGE+ YI+ P+G   GD I+SG  VPIK+GN+LPL
Sbjct:   69 RDKEAIPARVERIEYDPNRTAHIALLCYIDGERCYIIAPKGLKEGDKIISGPNVPIKLGNSLPL 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_XYLF2 (50S ribosomal protein L2 OS=Xylella fastidiosa (strain M23) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            R+++ I  R+  IEYDPNR A+I L+ Y DGE+ YI+ P+G   GD I+SG  VPIK+GN+LPL
Sbjct:   69 RDKEAIPARVERIEYDPNRTAHIALLCYIDGERCYIIAPKGLKEGDKIISGPNVPIKLGNSLPL 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_NITMU (50S ribosomal protein L2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RN+  I  R+  +EYDPNR+A + L+ Y DGE+RY++ P+G + G  ++SG + PIK GNALPL
Sbjct:   69 RNKDGIAARVERLEYDPNRSANLALLCYSDGERRYVIAPKGIVPGMQLMSGADAPIKNGNALPL 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_HAEIN (50S ribosomal protein L2 OS=Haemophilus influenzae GN=rplB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RN+ DI   +  +EYDPNR+A I L+ Y DGE+RYIL P+G  +GD I +G   PIK+GN+LP+
Sbjct:   69 RNKLDIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLSVGDQIQAGINSPIKVGNSLPM 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_HAEIG (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittGG) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RN+ DI   +  +EYDPNR+A I L+ Y DGE+RYIL P+G  +GD I +G   PIK+GN+LP+
Sbjct:   69 RNKLDIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLSVGDQIQAGINSPIKVGNSLPM 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RL2_HAEIE (50S ribosomal protein L2 OS=Haemophilus influenzae (strain PittEE) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RN+ DI   +  +EYDPNR+A I L+ Y DGE+RYIL P+G  +GD I +G   PIK+GN+LP+
Sbjct:   69 RNKLDIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLSVGDQIQAGINSPIKVGNSLPM 132          
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BORDL8.027e-1350.7550S ribosomal protein L2 OS=Borrelia duttonii (str... [more]
RL2_BLOPB8.027e-1356.7250S ribosomal protein L2 OS=Blochmannia pennsylvan... [more]
RL2_BAUCH8.027e-1350.7550S ribosomal protein L2 OS=Baumannia cicadellinic... [more]
RL2_XYLFT1.048e-1254.6950S ribosomal protein L2 OS=Xylella fastidiosa (st... [more]
RL2_XYLFM1.048e-1254.6950S ribosomal protein L2 OS=Xylella fastidiosa (st... [more]
RL2_XYLF21.048e-1254.6950S ribosomal protein L2 OS=Xylella fastidiosa (st... [more]
RL2_NITMU1.048e-1250.0050S ribosomal protein L2 OS=Nitrosospira multiform... [more]
RL2_HAEIN1.048e-1253.1350S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIG1.048e-1253.1350S ribosomal protein L2 OS=Haemophilus influenzae... [more]
RL2_HAEIE1.048e-1253.1350S ribosomal protein L2 OS=Haemophilus influenzae... [more]

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Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
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