FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_NUPAD (50S ribosomal protein L2, chloroplastic OS=Nuphar advena GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_DRIGR (50S ribosomal protein L2, chloroplastic OS=Drimys granadensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_AMBTC (50S ribosomal protein L2, chloroplastic OS=Amborella trichopoda GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.533e-30
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDT+VSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTVVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            RNE +IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPIKMGNALPL+ +
Sbjct:   67 RNENNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNI 133
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.439e-30
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKD  GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLS
Sbjct:   66 RNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS 130
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_NYMAL5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Nymphae... [more]
RK2_NUPAD5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Nuphar ... [more]
RK2_NANDO5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Nandina... [more]
RK2_DRIGR5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Drimys ... [more]
RK2_CALFG5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Calycan... [more]
RK2_AMBTC5.533e-3095.3850S ribosomal protein L2, chloroplastic OS=Amborel... [more]
RK2B_CHLSC5.533e-3095.3850S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RK2_CERDE7.227e-3093.8550S ribosomal protein L2, chloroplastic OS=Ceratop... [more]
RK2_PELHO9.439e-3091.0450S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2A_LIRTU9.439e-3095.3850S ribosomal protein L2-A, chloroplastic OS=Lirio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
back to top