FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI G+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDISGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PIPCE (50S ribosomal protein L2, chloroplastic OS=Piper cenocladum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNDKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK+IYGRIVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:   67 RNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK+IYGRIVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:   68 RNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 132          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:   67 RNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:   67 RNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:   67 RNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:   67 RNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.233e-29
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:   67 RNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.610e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKEISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_RANMC1.233e-2993.8550S ribosomal protein L2, chloroplastic OS=Ranuncu... [more]
RK2_PIPCE1.233e-2993.8550S ribosomal protein L2, chloroplastic OS=Piper c... [more]
RK2_PHAVU1.233e-2993.8550S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN1.233e-2993.8550S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_OENPA1.233e-2995.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL1.233e-2995.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH1.233e-2995.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI1.233e-2995.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR1.233e-2995.3150S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_PHAAO1.610e-2993.8550S ribosomal protein L2, chloroplastic OS=Phalaen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
back to top