FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.610e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNKKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.610e-29
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNKKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.103e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKD  GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:   67 RNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_IPOPU (50S ribosomal protein L2, chloroplastic OS=Ipomoea purpurea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDIYGRIVTIEYDPNRNAYICLIHYG+GEKRYILHPRGAIIGD+IVSGTEV IK+GNALPL+
Sbjct:   67 RNEKDIYGRIVTIEYDPNRNAYICLIHYGNGEKRYILHPRGAIIGDSIVSGTEVSIKIGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPI MGNALPL+
Sbjct:   69 RNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPISMGNALPLT 133
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
[Close]
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.587e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 3 
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_ACOCL1.610e-2993.8550S ribosomal protein L2, chloroplastic OS=Acorus ... [more]
RK2_ACOAM1.610e-2993.8550S ribosomal protein L2, chloroplastic OS=Acorus ... [more]
RK2B_LIRTU2.103e-2993.8550S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2_SACOF3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_LOLPR3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Lolium ... [more]
RK2_IPOPU3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Ipomoea... [more]
RK2_ILLOL3.587e-2993.8550S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_HORVU3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Hordeum... [more]
RK2_AGRST3.587e-2992.3150S ribosomal protein L2, chloroplastic OS=Agrosti... [more]

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Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
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