FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRI+TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIITIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.780e-28
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEK IYGRI+TIEYDPNRNAYICLIHYGDG+KRYILHPRGAIIGDT+VSGTEVPI +GNALPL+
Sbjct:   67 RNEKYIYGRIITIEYDPNRNAYICLIHYGDGDKRYILHPRGAIIGDTLVSGTEVPIIIGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ORYSJ (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ORYSI (50S ribosomal protein L2, chloroplastic OS=Oryza sativa subsp. indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ORYSA (50S ribosomal protein L2, chloroplastic OS=Oryza sativa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ORYNI (50S ribosomal protein L2, chloroplastic OS=Oryza nivara GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.325e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEK YILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.966e-28
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+KDI GRIVTIE DPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:   67 RNQKDISGRIVTIESDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.834e-28
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNAL 188
            RN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNAL
Sbjct:   67 RNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNAL 128          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PEA (50S ribosomal protein L2, chloroplastic OS=Pisum sativum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.834e-28
Identity = 59/65 (90.77%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RNEKDIYGRI+TIEYDPNRNA+ICLIHYGDGEKRYILHP+ AIIGDTIV GTEVPIKMGNALPL+
Sbjct:   67 RNEKDIYGRIITIEYDPNRNAHICLIHYGDGEKRYILHPK-AIIGDTIVYGTEVPIKMGNALPLT 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.384e-27
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+K+IYGRIVTIEYDPNRNA+ICLIHY +GEKRYILHPRGAIIGDTIVSGTEV IK+GNALPL+
Sbjct:   67 RNKKNIYGRIVTIEYDPNRNAHICLIHYRNGEKRYILHPRGAIIGDTIVSGTEVSIKIGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_MAIZE4.684e-2990.7750S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_EPIVI1.780e-2889.2350S ribosomal protein L2, plastid OS=Epifagus virg... [more]
RK2_ORYSJ2.325e-2890.7750S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSI2.325e-2890.7750S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYSA2.325e-2890.7750S ribosomal protein L2, chloroplastic OS=Oryza s... [more]
RK2_ORYNI2.325e-2890.7750S ribosomal protein L2, chloroplastic OS=Oryza n... [more]
RK2_WHEAT3.966e-2890.7750S ribosomal protein L2, chloroplastic OS=Triticu... [more]
RK2_SORBI8.834e-2893.5550S ribosomal protein L2, chloroplastic OS=Sorghum... [more]
RK2_PEA8.834e-2890.7750S ribosomal protein L2, chloroplastic OS=Pisum s... [more]
RK2_CUSRE4.384e-2787.6950S ribosomal protein L2, plastid OS=Cuscuta refle... [more]

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Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
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