FC923257

Overview
NameFC923257
Unique NameFC923257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194
            RN+K+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD+IVSGTEV IKMGNAL L
Sbjct:   67 RNKKNIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDSIVSGTEVSIKMGNALRL 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.080e-25
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+K+IYGRI+TIEYDPNRNA+ICLIHY +GEK YILHPRG IIGDTIVSGTEV IK+GNALPL+
Sbjct:   67 RNKKNIYGRIITIEYDPNRNAHICLIHYRNGEKGYILHPRGTIIGDTIVSGTEVSIKIGNALPLT 131          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.360e-25
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            RNEK I+G IVTIEYDPNR+AYICL+HYGDGEK+YILHPRG IIGDTI SG   PI +GNALPL+ V
Sbjct:   70 RNEKYIFGEIVTIEYDPNRSAYICLVHYGDGEKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDV 136          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.037e-24
Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            RNEKDI G+I TIEYDPNRNAYICLIHY +GEK YILHPRGA+IGDTI+SG EV IK+GN+LPL+ +
Sbjct:   64 RNEKDISGKIKTIEYDPNRNAYICLIHYVNGEKWYILHPRGALIGDTIISGPEVSIKIGNSLPLNEI 130          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+ D+ GRI +IEYDPNRN YICL++Y DGEKRYILHPRG  IGD IVSG+E PI  GNALPLS
Sbjct:   69 RNKIDVPGRIDSIEYDPNRNTYICLVNYEDGEKRYILHPRGIKIGDMIVSGSEAPISRGNALPLS 133          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PHYPA (50S ribosomal protein L2, chloroplastic OS=Physcomitrella patens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN+K+I G+I TIEYDPNR A ICL+HY DGEKRYILHPRG  +GDTI+S  E PI +GNALPL+
Sbjct:   69 RNKKNISGKITTIEYDPNRTANICLVHYEDGEKRYILHPRGLKVGDTIISSNEAPILIGNALPLT 133          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            R++KDI+GRI TIEYDPNRN +ICL +Y DGEK+YIL+P+G  IGD++VS TE PI +GNALPL+
Sbjct:   69 RDKKDIFGRIATIEYDPNRNTFICLTYYEDGEKKYILYPQGMRIGDSVVSSTEAPISIGNALPLT 133          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 3
Query:    3 RNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203
            R+EK+ I G+IVTIE DPNR+AYICL+HY DG+K YILHPRG +IGDTI+SG   PI MGNALPL+ +
Sbjct:   70 RSEKNNILGKIVTIESDPNRSAYICLVHYRDGQKTYILHPRGIMIGDTILSGPRAPISMGNALPLTNI 137          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            RN++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+
Sbjct:   70 RNKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 134          
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 3
Query:    3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197
            R+++ I GRIVT+EYDPNRNAYICL+HY DGEK+YILHP G  IGDTI+SG    I +GNALPL+
Sbjct:   70 RSKRGISGRIVTVEYDPNRNAYICLVHYEDGEKKYILHPGGIKIGDTIISGPMATILIGNALPLT 134          
The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PLAOC5.726e-2790.6350S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_CUSEX1.080e-2583.0850S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_CYCTA5.360e-2577.6150S ribosomal protein L2, chloroplastic OS=Cycas t... [more]
RK2_CUSGR2.037e-2477.6150S ribosomal protein L2, plastid OS=Cuscuta grono... [more]
RK2_ANGEV2.108e-2173.8550S ribosomal protein L2, chloroplastic OS=Angiopt... [more]
RK2_PHYPA2.753e-2170.7750S ribosomal protein L2, chloroplastic OS=Physcom... [more]
RK2_ANTFO8.009e-2167.6950S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RK2_CRYJA1.366e-2069.1250S ribosomal protein L2, chloroplastic OS=Cryptom... [more]
RK2_PINTH1.784e-2067.6950S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_HUPLU2.330e-2069.2350S ribosomal protein L2, chloroplastic OS=Huperzi... [more]

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Properties
Property NameValue
Genbank descriptionC31702G04EF StrClemenN Citrus clementina cDNA clone C31702G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bp
GACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGAC
CCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAA
GAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTT
CTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCG
GTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGAC
GAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAG
ACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTA
GTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGA
CTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAG
AGAGGAGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGA
AAGCTAAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAGAATAG
AGATGTCTCCTACGTTACTCATAATATGTGGAAGTATCGACGTAATTTCA
TAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGG
AACGGGAAGACCTAGGATGTAGAAGAATCATACATGAGTGATTCGGCAGA
TTTGGATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGT
GGTACTTCATATAT
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