FC923257
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.726e-27 Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 194 RN+K+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD+IVSGTEV IKMGNAL L Sbjct: 67 RNKKNIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDSIVSGTEVSIKMGNALRL 130
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.080e-25 Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 RN+K+IYGRI+TIEYDPNRNA+ICLIHY +GEK YILHPRG IIGDTIVSGTEV IK+GNALPL+ Sbjct: 67 RNKKNIYGRIITIEYDPNRNAHICLIHYRNGEKGYILHPRGTIIGDTIVSGTEVSIKIGNALPLT 131
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.360e-25 Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203 RNEK I+G IVTIEYDPNR+AYICL+HYGDGEK+YILHPRG IIGDTI SG PI +GNALPL+ V Sbjct: 70 RNEKYIFGEIVTIEYDPNRSAYICLVHYGDGEKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDV 136
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.037e-24 Identity = 52/67 (77.61%), Postives = 60/67 (89.55%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203 RNEKDI G+I TIEYDPNRNAYICLIHY +GEK YILHPRGA+IGDTI+SG EV IK+GN+LPL+ + Sbjct: 64 RNEKDISGKIKTIEYDPNRNAYICLIHYVNGEKWYILHPRGALIGDTIISGPEVSIKIGNSLPLNEI 130
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21 Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 RN+ D+ GRI +IEYDPNRN YICL++Y DGEKRYILHPRG IGD IVSG+E PI GNALPLS Sbjct: 69 RNKIDVPGRIDSIEYDPNRNTYICLVNYEDGEKRYILHPRGIKIGDMIVSGSEAPISRGNALPLS 133
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PHYPA (50S ribosomal protein L2, chloroplastic OS=Physcomitrella patens GN=rpl2 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21 Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 RN+K+I G+I TIEYDPNR A ICL+HY DGEKRYILHPRG +GDTI+S E PI +GNALPL+ Sbjct: 69 RNKKNISGKITTIEYDPNRTANICLVHYEDGEKRYILHPRGLKVGDTIISSNEAPILIGNALPLT 133
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21 Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 R++KDI+GRI TIEYDPNRN +ICL +Y DGEK+YIL+P+G IGD++VS TE PI +GNALPL+ Sbjct: 69 RDKKDIFGRIATIEYDPNRNTFICLTYYEDGEKKYILYPQGMRIGDSVVSSTEAPISIGNALPLT 133
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.366e-20 Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 3 Query: 3 RNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 203 R+EK+ I G+IVTIE DPNR+AYICL+HY DG+K YILHPRG +IGDTI+SG PI MGNALPL+ + Sbjct: 70 RSEKNNILGKIVTIESDPNRSAYICLVHYRDGQKTYILHPRGIMIGDTILSGPRAPISMGNALPLTNI 137
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20 Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 RN++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+ Sbjct: 70 RNKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 134
BLAST of FC923257 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20 Identity = 45/65 (69.23%), Postives = 54/65 (83.08%), Query Frame = 3 Query: 3 RNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 197 R+++ I GRIVT+EYDPNRNAYICL+HY DGEK+YILHP G IGDTI+SG I +GNALPL+ Sbjct: 70 RSKRGISGRIVTVEYDPNRNAYICLVHYEDGEKKYILHPGGIKIGDTIISGPMATILIGNALPLT 134 The following BLAST results are available for this feature:
BLAST of FC923257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923257 ID=FC923257; Name=FC923257; organism=Citrus clementina; type=EST; length=764bpback to top |