FC923258

Overview
NameFC923258
Unique NameFC923258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: TRAF7_HUMAN (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query:   28 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            GPV  +   ++G DLLF+G+ D  I  W    T  C +   +L+GH   V++L +   KLYSGS D +I VW+++ LQ + T+  H + V +L+    +L S SL K IKVW
Sbjct:  397 GPVWCLCVYSMG-DLLFSGSSDKTIKVWDTCTTYKCQK---TLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHNVLFSGSL-KAIKVW 503          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: SCONB_EMENI (Sulfur metabolite repression control protein OS=Emericella nidulans GN=sconB PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 50/164 (30.49%), Postives = 75/164 (45.73%), Query Frame = 1
Query:   19 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 510
            +  G    V  +   +++L  G+ D  I  W     T   E   +L+GH   +  L     KL SGSMD +I+VWN  T +CI T T H   V+ L     +L S S+DKT+K+W   D     +    +  + V       D+  + V   S +D +VR +DL
Sbjct:  344 TFKGHTNGVMCLQFEDNILATGSYDTTIKIWD----TETGEELRTLRGHESGIRCLQFDDTKLISGSMDRTIKVWNWRTGECISTYTGHRGGVIGLHFDASILASGSVDKTVKIWNFEDKSTFSLRGHTDWVNAVRV-----DTSSRTVFSAS-DDCTVRLWDL 497          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: FBXW7_MOUSE (F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 50/163 (30.67%), Postives = 76/163 (46.63%), Query Frame = 1
Query:   22 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDL 510
            L G V  V  +      + +G  D  +  W     T C     +L+GH+  V SL      + SGS+D SIRVW++ET  CI TLT H S+   +   D +L+S + D T+K+W    +G    T     +H     C       K  ++ S +D +V+ +DL
Sbjct:  419 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLH---TLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW-DIKTGQCLQTLQGPSKHQSAVTC---LQFNKNFVITSSDDGTVKLWDL 573          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 58/217 (26.73%), Postives = 101/217 (46.54%), Query Frame = 1
Query:    7 NTDLSLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANK--LYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQ--LLLSCSLDKTIKVWFATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCNDNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGGLFFTGDGTGQ-VRVWQWCNG 639
            NTD +L  PV    A +    +L +G+ D  +  W +       +  +SL+GH+  +  +    +   L S S D+S+R+WN+ T QC Q L EHT  V +++   Q  ++ + S D T+K+W  +    L+    H+++  +L +   PD +   +L  +  D SVR +D  +    G +      + +    P G       T Q V++W W  G
Sbjct:  935 NTDWAL--PV----AFSPDRQILASGSNDKTVKLWDWQTG----KYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDK--ILGMAWSPDGQ---LLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQG 1136          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: SCON2_NEUCR (Sulfur controller 2 OS=Neurospora crassa GN=scon-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  154 LKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            LKGH   V  L +  N L +GS D +I++WN+ET +CI+TL  HT+ + +L   D  L+S SLD TIKVW
Sbjct:  290 LKGHENGVTCLQLDDNILATGSYDTTIKIWNIETEECIRTLVGHTAGIRALQFDDSKLISGSLDHTIKVW 359          

HSP 2 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1
Query:   22 LSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            L G    V  + + +++L  G+ D  I  W    T  C     +L GH+  + +L    +KL SGS+D++I+VWN  T +C+ T   HT  V+S+     LL S S DKT+K++
Sbjct:  290 LKGHENGVTCLQLDDNILATGSYDTTIKIWNIE-TEECIR---TLVGHTAGIRALQFDDSKLISGSLDHTIKVWNWHTGECLSTFAAHTDSVISVHFDGHLLASGSSDKTVKIF 399          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: MET30_YEAST (F-box protein MET30 OS=Saccharomyces cerevisiae GN=MET30 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 40/112 (35.71%), Postives = 58/112 (51.79%), Query Frame = 1
Query:   28 GPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSCSLDKTIKVW 363
            G +  V  +     LLF G+ D  I  W         +    L GHS  V +L     KL +GS+D +IRVWN  T +CI T   H+  V+S+  + ++++S S DKT+KVW
Sbjct:  300 GHMDGVLTLQFNYRLLFTGSYDSTIGIWDLFTG----KLIRRLSGHSDGVKTLYFDDRKLITGSLDKTIRVWNYITGECISTYRGHSDSVLSVDSYQKVIVSGSADKTVKVW 407          
BLAST of FC923258 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 58/207 (28.02%), Postives = 91/207 (43.96%), Query Frame = 1
Query:   19 SLSGPVGQVYAMAVGNDLLFAGTQDGAILAWKFNVTTNCFEPAASLKGHSLAVVSLVVGANKLYSGSMDNSIRVWNLETLQCIQTLTEHTSVVMSLLCWDQLLLSC--SLDKTIKVW-FATDSGNLEVTYTHNEEHGVLALCGMPDSEGKPVLLCSCN-DNSVRFYDLPSFAERGKIFA-KQEIRAIQLGPGGLFFTGDGTGQVRVW 624
            +L G    V  MA+   +L  G++D  +  W      +     A+L GH  AV  +      + SG  D ++++WN  T +CI+TLT H + V SLL   +  + C  SLD +I+VW F    G   V        G  +L       G   +L SCN D+ VR +D+        +   +  I ++Q     +  T    G V++W
Sbjct:  333 TLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESGRHL----ATLHGHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQECVALL----QGHTSLTSGMQLRGN--ILVSCNADSHVRVWDIHEGTCVHMLSGHRSAITSLQWFGRNMVATSSDDGTVKLW 529          
The following BLAST results are available for this feature:
BLAST of FC923258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TRAF7_HUMAN7.798e-1239.29E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
SCONB_EMENI7.798e-1230.49Sulfur metabolite repression control protein OS=Em... [more]
FBXW7_MOUSE7.798e-1230.67F-box/WD repeat-containing protein 7 OS=Mus muscul... [more]
Y2800_ANASP2.963e-1126.73Uncharacterized WD repeat-containing protein alr28... [more]
SCON2_NEUCR3.870e-1148.57Sulfur controller 2 OS=Neurospora crassa GN=scon-2... [more]
MET30_YEAST5.054e-1135.71F-box protein MET30 OS=Saccharomyces cerevisiae GN... [more]
SEL10_CAEEL8.621e-1128.02F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702G05EF StrClemenN Citrus clementina cDNA clone C31702G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923258 ID=FC923258; Name=FC923258; organism=Citrus clementina; type=EST; length=713bp
CAAACTAATACTGACCTGAGTCTTAGTGGACCTGTGGGACAAGTTTACGC
AATGGCTGTCGGTAATGATTTACTCTTCGCTGGTACGCAGGATGGGGCTA
TATTGGCATGGAAGTTTAATGTTACCACCAACTGCTTTGAACCAGCTGCG
TCGCTCAAAGGTCACTCTCTTGCAGTGGTATCTTTAGTTGTCGGAGCTAA
TAAGCTTTACTCTGGTTCCATGGACAATTCAATAAGAGTGTGGAACCTTG
AAACTCTGCAGTGCATACAGACTCTAACAGAGCACACTTCAGTCGTGATG
TCACTTCTTTGCTGGGATCAGCTTCTTTTATCATGTTCATTGGACAAAAC
AATAAAGGTGTGGTTTGCTACAGATAGTGGAAACCTGGAAGTGACTTATA
CTCACAATGAAGAACATGGAGTGCTTGCCCTGTGTGGAATGCCTGATTCA
GAAGGCAAGCCAGTCTTGCTGTGCTCTTGCAATGACAACTCTGTCCGCTT
CTATGATTTGCCATCGTTTGCTGAGAGGGGTAAAATTTTTGCCAAACAAG
AGATTCGAGCCATTCAGCTGGGCCCTGGCGGTCTGTTTTTCACTGGTGAT
GGGACTGGTCAAGTGAGAGTGTGGCAATGGTGTAACGGGCCGGTTGCAAC
TTGATGACCAGTGCAATATCATAAGTGCCATTATGTCTTTTGACTCGTCA
TTATCCATTTCCT
back to top