FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_STRMU (Signal recognition particle protein OS=Streptococcus mutans GN=ffh PE=3 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.281e-25
Identity = 55/127 (43.31%), Postives = 86/127 (67.72%), Query Frame = 1
Query:  280 FGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRE 660
            F  LT  L+  +  L+G+  L+++++ E  ++IR ALLEADV+LPVV+ F++ V ++AVG  +I  + P QQ++KIV +EL  ++G E +E+  +   PT+I++ GLQG GKTT + KLAN L   E
Sbjct:    3 FESLTERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVIDTLDPSQQIIKIVNEELTAVLGSETAEIEKSSKIPTIIMMVGLQGAGKTTFAGKLANKLVKEE 129          

HSP 2 Score: 25.0238 bits (53), Expect = 1.281e-25
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  651 EQGKSCMLVAGDVYRPAAI 707
            E+    +++A D+YRPAAI
Sbjct:  128 EENARPLMIAADIYRPAAI 146          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HAEIN (Signal recognition particle protein OS=Haemophilus influenzae GN=ffh PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.681e-25
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  L+  L      + G+  LT++NI E +R++R ALLEADV+LPVVR F+  V E A+G  + + + P Q+ +KIV+ EL K MG     L  A   P VIL+AGLQG GKTT   KLA +L+ R +
Sbjct:    1 MFENLSDRLSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALGEEVNKSLTPGQEFLKIVQRELEKAMGEANESLNLATQPPAVILMAGLQGAGKTTSVGKLAKFLRERHK 129          

HSP 2 Score: 25.0238 bits (53), Expect = 3.681e-25
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            K  ++V+ DVYRPAAI
Sbjct:  130 KKVLVVSADVYRPAAI 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ffh PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 58/141 (41.13%), Postives = 94/141 (66.67%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTDL 699
            MF  LT  L  +  K+  +  LT+ENI + +R++R+ALLEADV+L V+++F+Q VS++A+G  + + + P Q+ +KIV++EL+  MG +  +L  +   P +IL+ GLQGVGKTT   KLA ++K  E+    +L + TD+
Sbjct:    1 MFNNLTERLSQSLRKIINKGRLTEENIKDTIREVRKALLEADVTLSVIKKFIQNVSKKAIGHEINKSLTPGQEFIKIVKNELILSMGEKNHDLNLSIQPPAIILVVGLQGVGKTTTLVKLAKWIK--EKYKKKILTVSTDI 139          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_BUCAI (Signal recognition particle protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ffh PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 54/127 (42.52%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            MF  LT  L  +  K+  +  LT+ENI E +R++R+ALLEADV+L V+++F++ V ++++G  + + + P Q+ +KIV+ EL+  MG +   L F+   P VIL+ GLQG GKTT  AKL  ++KN+
Sbjct:    1 MFNNLTQRLSDSLKKILNKGRLTEENIKETIREVRKALLEADVALSVIKKFIENVKKKSIGHEINKSLTPGQEFIKIVKHELIFAMGEKNHSLNFSIEPPAVILVVGLQGSGKTTSLAKLGKWIKNK 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_RICPR (Signal recognition particle protein OS=Rickettsia prowazekii GN=ffh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.923e-22
Identity = 53/131 (40.46%), Postives = 81/131 (61.83%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGG--EVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L   ++KL     LT+  I   MRD+R ALLE+DV+LPV++ F++ V ++A+G  +I+ V P Q ++KI+ +E++ L+      ++L      P  +L+ GLQG GKTT S KLA  LKN+ +
Sbjct:    1 MFKTLTQNLTKIFDKLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIEEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASTESTTKLNLNAKPPVNLLIVGLQGGGKTTASGKLALRLKNQNK 131          

HSP 2 Score: 23.483 bits (49), Expect = 9.923e-22
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  654 QGKSCMLVAGDVYRPAA 704
            Q K  +LV+ D YRPAA
Sbjct:  129 QNKKVLLVSLDTYRPAA 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_RICBR (Signal recognition particle protein OS=Rickettsia bellii (strain RML369-C) GN=ffh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.923e-22
Identity = 54/131 (41.22%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSEL-VFAKSRPTV-ILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L   +++L     LT+E I   +RDIR ALLE+DV+LPV++ FV  V ++A+G  +I+ V P Q ++KI+ +E++ ++     E+ +   ++P V +L+ GLQG GKTT S KLA  LKN+ +
Sbjct:    1 MFKTLTQNLMKIFDRLVSSGLLTEEQIDAALRDIRVALLESDVALPVIKNFVAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINILSSSEDEIKLNLNAKPPVNLLMVGLQGSGKTTASGKLALCLKNQNK 131          

HSP 2 Score: 23.483 bits (49), Expect = 9.923e-22
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  654 QGKSCMLVAGDVYRPAA 704
            Q K  +LV+ D YRPAA
Sbjct:  129 QNKKVLLVSLDTYRPAA 145          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_RICFE (Signal recognition particle protein OS=Rickettsia felis GN=ffh PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L   ++KL     LT+  I   MRDIR ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    SE  L      P   L+ GLQG GKTT S+KLA  LKN+ +
Sbjct:    1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSESETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLKNQNK 131          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_BUCBP (Signal recognition particle protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ffh PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 51/127 (40.16%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            MF  LT        K+  +  LT++NI E +R+IR ALLEADV+LPVV+ F+ ++ +  +G  + + + P Q+L+KIV+ EL  ++G E   L  + + P +IL+ GLQG GKTT +AKL   ++ +
Sbjct:    1 MFNNLTQRFLKIIKKISNKGRLTEKNIKETLREIRIALLEADVALPVVKNFIPSIQKSVIGNQVNKSLTPGQELIKIVKKELTLILGKENHSLNLSVTPPAIILMIGLQGSGKTTTTAKLGQLIRTK 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_RICCN (Signal recognition particle protein OS=Rickettsia conorii GN=ffh PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE--LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L   ++KL     LT+  I   MRDIR ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    SE  L      P   L+ GLQG GKTT S+KLA  L+N+ +
Sbjct:    1 MFKTLTQNLTKIFDKLVSSGILTEAQIDAAMRDIRVALLESDVALPVIKDFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSKSETKLNLNSKPPVNFLMVGLQGSGKTTASSKLALRLRNQNK 131          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_RICTY (Signal recognition particle protein OS=Rickettsia typhi GN=ffh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.507e-20
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVS--ELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF  LT  L   +++L     LT+  I   MRD+R ALLE+DV+LPV++ F+  V ++A+G  +I+ V P Q ++KI+ +E++ L+    S  +L      P  +L+ GLQG GKTT S KLA  LKN+ +
Sbjct:    1 MFKTLTQNLTKIFDRLVNSGILTENQIDTAMRDVRVALLESDVALPVIKGFIAEVKQKALGQEVIKSVSPGQMIIKIIHEEMINLLASSESTTKLNLNSKPPVNLLMVGLQGGGKTTASGKLALLLKNQNK 131          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_STRMU1.281e-2543.31Signal recognition particle protein OS=Streptococc... [more]
SRP54_HAEIN3.681e-2545.74Signal recognition particle protein OS=Haemophilus... [more]
SRP54_BUCAP4.003e-2441.13Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_BUCAI7.549e-2342.52Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_RICPR9.923e-2240.46Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICBR9.923e-2241.22Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICFE7.066e-2142.75Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_BUCBP7.066e-2140.16Signal recognition particle protein OS=Buchnera ap... [more]
SRP54_RICCN1.574e-2041.98Signal recognition particle protein OS=Rickettsia ... [more]
SRP54_RICTY3.507e-2040.46Signal recognition particle protein OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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