FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.466e-19 Identity = 50/127 (39.37%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NKLK + K+ I E ++DI+RAL++ADV++ +V + + + +A+ +G+ + ++KIV +ELVKL+G E +L + VILL G+QG GKTT +AKLA Y++ R Sbjct: 1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 127 HSP 2 Score: 22.3274 bits (46), Expect = 1.466e-19 Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3 Query: 651 EQGKSCMLVAGDVYRPAA 704 ++G L+A D YRPAA Sbjct: 126 KRGLKPALIAADTYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 5.460e-19 Identity = 53/129 (41.09%), Postives = 83/129 (64.34%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663 MF QL++ L+ A +L+G +T+E++ +R+IRRAL++ADV+L V R FV+ V E+A+G ++ + P + ++ V + L + +GGE + L K R + L GLQG GKTT +AKLA Y K + R Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 HSP 2 Score: 21.557 bits (44), Expect = 5.460e-19 Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3 Query: 654 QGKSCMLVAGDVYRPAA 704 +G+ +LVA D RPAA Sbjct: 125 KGRRPLLVAADTQRPAA 141
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.224e-19 Identity = 47/127 (37.01%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G + +L S+ +VILL G+QG GKTT +AKLA Y++ + Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKK 127 HSP 2 Score: 23.0978 bits (48), Expect = 9.224e-19 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 672 LVAGDVYRPAA 704 L+A DVYRPAA Sbjct: 133 LIAADVYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.199e-18 Identity = 48/127 (37.80%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NKLK + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKLA Y++ + Sbjct: 1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127 HSP 2 Score: 23.0978 bits (48), Expect = 1.199e-18 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 672 LVAGDVYRPAA 704 L+A DVYRPAA Sbjct: 133 LIAADVYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.199e-18 Identity = 47/127 (37.01%), Postives = 78/127 (61.42%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G + ++KIV DELVKL+G +L S+ +VILL G+QG GKTT SAKLA Y++ + Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKLARYIQKK 127 HSP 2 Score: 23.8682 bits (50), Expect = 1.199e-18 Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 651 EQGKSCMLVAGDVYRPAA 704 ++G L+A D+YRPAA Sbjct: 126 KKGMKPALIAADIYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.637e-18 Identity = 47/127 (37.01%), Postives = 79/127 (62.20%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELVKL+G +L S+ +VILL G+QG GKTT +AKLA Y++ + Sbjct: 1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127 HSP 2 Score: 23.0978 bits (48), Expect = 2.637e-18 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 672 LVAGDVYRPAA 704 L+A DVYRPAA Sbjct: 133 LIAADVYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.797e-18 Identity = 49/128 (38.28%), Postives = 81/128 (63.28%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL--KNRERV 666 L+ ++ + K TL +ENI E +++IR +LLEADV++ + + V ++A+G + G QQ++KIV +ELV ++G E + L K +P+V+++ GLQG GKTT + KLA L KN+++V Sbjct: 7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKV 133 HSP 2 Score: 22.3274 bits (46), Expect = 5.797e-18 Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3 Query: 660 KSCMLVAGDVYRPAAI 707 K +LV D+YRP AI Sbjct: 131 KKVLLVGLDIYRPGAI 146
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 7.536e-18 Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L L A NK+K + K+ + E ++DI++AL+++DV++ +V + + +A+ +G+ + +VKIV DELV L+G +L S+ +VILL G+QG GKTT +AKLA Y++ + Sbjct: 1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127 HSP 2 Score: 23.0978 bits (48), Expect = 7.536e-18 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3 Query: 672 LVAGDVYRPAA 704 L+A DVYRPAA Sbjct: 133 LIAADVYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.639e-17 Identity = 46/127 (36.22%), Postives = 76/127 (59.84%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M +L S + A +K+K + K+ + E ++DI++AL++ADV++ +V + + +A+ +G+ ++KIV DELVKL+G E +L +ILL G+QG GKTT +AKLA L+ R Sbjct: 1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKR 127 HSP 2 Score: 23.483 bits (49), Expect = 3.639e-17 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 651 EQGKSCMLVAGDVYRPAA 704 ++G L+A DVYRPAA Sbjct: 126 KRGFKPALIAADVYRPAA 143
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17 Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTD 696 M G L L KL G + +E + E ++DI+RAL+++DV++ +V +++ E+A+ +G+ P + ++ IV DE+VKL+G + ELV +P IL GLQG GKTT KLA YL+ + ++ +CTD Sbjct: 1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVI-DDKPYRILFLGLQGSGKTTTIGKLARYLRKK---GFTVGVVCTD 136 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |