FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METJA (Signal recognition 54 kDa protein OS=Methanocaldococcus jannaschii GN=srp54 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.466e-19
Identity = 50/127 (39.37%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NKLK    + K+ I E ++DI+RAL++ADV++ +V +  + +  +A+     +G+   + ++KIV +ELVKL+G E  +L     +  VILL G+QG GKTT +AKLA Y++ R
Sbjct:    1 MLDKLGENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKR 127          

HSP 2 Score: 22.3274 bits (46), Expect = 1.466e-19
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  651 EQGKSCMLVAGDVYRPAA 704
            ++G    L+A D YRPAA
Sbjct:  126 KRGLKPALIAADTYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 5.460e-19
Identity = 53/129 (41.09%), Postives = 83/129 (64.34%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER 663
            MF QL++ L+ A  +L+G   +T+E++   +R+IRRAL++ADV+L V R FV+ V E+A+G  ++  + P + ++  V + L + +GGE + L   K R  +  L GLQG GKTT +AKLA Y K + R
Sbjct:    1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGGE-ARLPVLKDR-NLWFLVGLQGSGKTTTAAKLALYYKGKGR 127          

HSP 2 Score: 21.557 bits (44), Expect = 5.460e-19
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  654 QGKSCMLVAGDVYRPAA 704
            +G+  +LVA D  RPAA
Sbjct:  125 KGRRPLLVAADTQRPAA 141          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.224e-19
Identity = 47/127 (37.01%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G  + +L    S+ +VILL G+QG GKTT +AKLA Y++ +
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETIQKLELDASKKSVILLIGIQGSGKTTSAAKLARYIQKK 127          

HSP 2 Score: 23.0978 bits (48), Expect = 9.224e-19
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  672 LVAGDVYRPAA 704
            L+A DVYRPAA
Sbjct:  133 LIAADVYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.199e-18
Identity = 48/127 (37.80%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NKLK    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G    +L    S+ +VILL G+QG GKTT +AKLA Y++ +
Sbjct:    1 MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIDEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127          

HSP 2 Score: 23.0978 bits (48), Expect = 1.199e-18
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  672 LVAGDVYRPAA 704
            L+A DVYRPAA
Sbjct:  133 LIAADVYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.199e-18
Identity = 47/127 (37.01%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G    + ++KIV DELVKL+G    +L    S+ +VILL G+QG GKTT SAKLA Y++ +
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGFSKKEHIIKIVYDELVKLLGENPQKLELDPSKKSVILLVGIQGSGKTTSSAKLARYIQKK 127          

HSP 2 Score: 23.8682 bits (50), Expect = 1.199e-18
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  651 EQGKSCMLVAGDVYRPAA 704
            ++G    L+A D+YRPAA
Sbjct:  126 KKGMKPALIAADIYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.637e-18
Identity = 47/127 (37.01%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELVKL+G    +L    S+ +VILL G+QG GKTT +AKLA Y++ +
Sbjct:    1 MLDKLGQNLSDALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127          

HSP 2 Score: 23.0978 bits (48), Expect = 2.637e-18
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  672 LVAGDVYRPAA 704
            L+A DVYRPAA
Sbjct:  133 LIAADVYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCMY (Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.797e-18
Identity = 49/128 (38.28%), Postives = 81/128 (63.28%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYL--KNRERV 666
            L+  ++ +  K     TL +ENI E +++IR +LLEADV++   +  +  V ++A+G  +  G    QQ++KIV +ELV ++G E + L   K +P+V+++ GLQG GKTT + KLA  L  KN+++V
Sbjct:    7 LSKRMQKSIEKNMKNSTLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVHEELVNILGKENAPLDINK-KPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKKV 133          

HSP 2 Score: 22.3274 bits (46), Expect = 5.797e-18
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            K  +LV  D+YRP AI
Sbjct:  131 KKVLLVGLDIYRPGAI 146          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.536e-18
Identity = 46/127 (36.22%), Postives = 78/127 (61.42%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L   L  A NK+K    + K+ + E ++DI++AL+++DV++ +V    + +  +A+     +G+   + +VKIV DELV L+G    +L    S+ +VILL G+QG GKTT +AKLA Y++ +
Sbjct:    1 MLDKLGQNLSEALNKIKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAIEEAPPKGLSKKEHIVKIVYDELVNLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKLARYIQKK 127          

HSP 2 Score: 23.0978 bits (48), Expect = 7.536e-18
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  672 LVAGDVYRPAA 704
            L+A DVYRPAA
Sbjct:  133 LIAADVYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.639e-17
Identity = 46/127 (36.22%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M  +L S +  A +K+K    + K+ + E ++DI++AL++ADV++ +V    + +  +A+     +G+     ++KIV DELVKL+G E  +L        +ILL G+QG GKTT +AKLA  L+ R
Sbjct:    1 MLDKLGSNINNALSKIKNATFVDKKLVKEVIKDIQKALIQADVNVKLVFAMSKEIERKAIYESAPKGLSKKDHIIKIVYDELVKLLGEEGQKLELDPKNKNIILLVGIQGSGKTTSAAKLARTLQKR 127          

HSP 2 Score: 23.483 bits (49), Expect = 3.639e-17
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  651 EQGKSCMLVAGDVYRPAA 704
            ++G    L+A DVYRPAA
Sbjct:  126 KRGFKPALIAADVYRPAA 143          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTD 696
            M G L   L     KL G   + +E + E ++DI+RAL+++DV++ +V    +++ E+A+     +G+ P + ++ IV DE+VKL+G +  ELV    +P  IL  GLQG GKTT   KLA YL+ +     ++  +CTD
Sbjct:    1 MLGNLGRSLSKTMKKLAGMTIVDEEVVREVIKDIQRALIQSDVNIKLVFNLSKSIEERALNEEPPKGITPKEHIISIVYDEMVKLLGEKSHELVI-DDKPYRILFLGLQGSGKTTTIGKLARYLRKK---GFTVGVVCTD 136          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_METJA1.466e-1939.37Signal recognition 54 kDa protein OS=Methanocaldoc... [more]
SRP54_THEAQ5.460e-1941.09Signal recognition particle protein OS=Thermus aqu... [more]
SRP54_METM69.224e-1937.01Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METMP1.199e-1837.80Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METVS1.199e-1837.01Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM52.637e-1837.01Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_MYCMY5.797e-1838.28Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_METM77.536e-1836.22Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_META33.639e-1736.22Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METTH4.740e-1736.43Signal recognition 54 kDa protein OS=Methanobacter... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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