FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L +A  KL    T+ +  I E +RDI+RALL+ADV++ +V +  + + ++A+      GV   + ++KIV +EL K +G E   L   K +PTVIL  G+QG GKTT  AKLA YL+ R
Sbjct:    5 KLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI-KHKPTVILTVGIQGSGKTTSVAKLARYLQKR 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L +A  KL    T+ +  I E +RDI+RAL+++DV++ +V +  + + E+A+      GV P + ++KIV +EL KL+G E   L   + +PT++L  G+QG GKTT  AKLA +L+ R
Sbjct:    5 KLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLLGKEAVPLEI-REKPTILLTVGIQGSGKTTTIAKLARHLQKR 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16
Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651
            M   LT     A  KL     +T++NI + +R+IR ALLEADV   V + F++ + E+ VG  + + + P + ++K V +ELV ++GGE ++L     +   +L  GLQG GKTT   K+AN LK
Sbjct:    1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVIKTVYEELVDILGGEKADL-----KKGTVLFVGLQGTGKTTTIGKIANLLK 120          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.137e-15
Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  334 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +T+++ ++   +++IR ALL+ADV+L VV+ F++A+ EQ VG  +  G    + L+K+++ EL+ ++     E+     RP  +++ GLQG GKTT   KLA +LK +
Sbjct:   21 QTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILSQPNQEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQ 126          

HSP 2 Score: 25.409 bits (54), Expect = 3.137e-15
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  660 KSCMLVAGDVYRPAAI 707
            +  MLVA D+YRPAAI
Sbjct:  129 QKAMLVALDIYRPAAI 144          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L  A  KL    T+ +  I E +RDI+RAL++ADV++ +V    + + ++A+      GV   + ++KIV +EL K +G E   +   K +PTV+L  G+QG GKTT  AKLA Y + R
Sbjct:    5 KLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARYFQKR 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTD 696
            M   L+  L     KL G   + K+ + +  +DI+RAL+++DV++ VV    + + ++A+   L +G+ P + +++IV  ELV L+G +  EL   + +P  I++ GLQG GKTT +AKL  +LK +   +     +CTD
Sbjct:    1 MLEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVYQELVNLIGEKPEELKINR-KPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAI---VCTD 136          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRP-TVILLAGLQGVGKTTVSAKLANYLKNR 657
            K+KG   + ++ + E +RD++RALLEADV + +V    + + ++A+      GV     L++IV +ELV+L+GGE +E L    SR   VI+L GL G+GKTT +AKLA YL+ +
Sbjct:   14 KIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPAGVPKRDYLLRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRK 128          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 1
Query:  274 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            E+FG+L         K++G + + +  + E  R+I+R LL+ADV L +V+ F +   ++        G+ P + L+ ++ +ELVKL+GGE         +P ++LL G++G GKTT +AKLA YL  R
Sbjct:    6 EIFGKLLE-------KIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKPPAGIPPREYLIYVLYEELVKLLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKR 126          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.549e-14
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L+S +     K    +T+T++++   +++IR ALL+ADV+L VV+ F++A+ ++ VG  +  G    + L+K ++ EL+ ++     EL   + RP  I++ GLQG GKTT   KLA +L+ +
Sbjct:    6 LSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPNQEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKK 126          

HSP 2 Score: 23.483 bits (49), Expect = 2.549e-14
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  669 MLVAGDVYRPAAI 707
            MLV  D+YRPAAI
Sbjct:  132 MLVGLDIYRPAAI 144          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L   L  A  K+    ++ +  + E +RDI+RALL+ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PTV+L  G+QG GKTT  AKLA Y + R
Sbjct:    6 LGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKR 127          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_PYRKO8.084e-1741.13Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_THEGJ1.801e-1638.71Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_AQUAE1.801e-1638.40Signal recognition particle protein OS=Aquifex aeo... [more]
SRP54_MYCPN3.137e-1536.11Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_THEON4.436e-1537.90Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_METST5.794e-1533.57Signal recognition 54 kDa protein OS=Methanosphaer... [more]
SRP54_METKA1.686e-1441.74Signal recognition 54 kDa protein OS=Methanopyrus ... [more]
SRP54_PYRAE2.202e-1435.16Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_MYCGE2.549e-1434.15Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_PYRHO6.406e-1435.77Signal recognition 54 kDa protein OS=Pyrococcus ho... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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