FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17 Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L +A KL T+ + I E +RDI+RALL+ADV++ +V + + + ++A+ GV + ++KIV +EL K +G E L K +PTVIL G+QG GKTT AKLA YL+ R Sbjct: 5 KLGQALNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGVSKKEHIIKIVYEELTKFLGTEAKPLEI-KHKPTVILTVGIQGSGKTTSVAKLARYLQKR 127
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16 Identity = 48/124 (38.71%), Postives = 77/124 (62.10%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L +A KL T+ + I E +RDI+RAL+++DV++ +V + + + E+A+ GV P + ++KIV +EL KL+G E L + +PT++L G+QG GKTT AKLA +L+ R Sbjct: 5 KLGKALNSALRKLARSSTVDEALIREVVRDIQRALIQSDVNVRLVLQLTKRIQERALNEKPPAGVSPREHVIKIVYEELTKLLGKEAVPLEI-REKPTILLTVGIQGSGKTTTIAKLARHLQKR 127
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_AQUAE (Signal recognition particle protein OS=Aquifex aeolicus GN=ffh PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.801e-16 Identity = 48/125 (38.40%), Postives = 73/125 (58.40%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651 M LT A KL +T++NI + +R+IR ALLEADV V + F++ + E+ VG + + + P + ++K V +ELV ++GGE ++L + +L GLQG GKTT K+AN LK Sbjct: 1 MLELLTEKFSHALEKLTNARKITEKNINQTLREIRLALLEADVDYQVAKDFIKRIREKVVGKEVPKNLSPAEFVIKTVYEELVDILGGEKADL-----KKGTVLFVGLQGTGKTTTIGKIANLLK 120
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCPN (Signal recognition particle protein OS=Mycoplasma pneumoniae GN=ffh PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.137e-15 Identity = 39/108 (36.11%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 334 ETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +T+++ ++ +++IR ALL+ADV+L VV+ F++A+ EQ VG + G + L+K+++ EL+ ++ E+ RP +++ GLQG GKTT KLA +LK + Sbjct: 21 QTISETDVQAVLKEIRIALLDADVNLLVVKNFIKAIREQTVGQTVEPGQDLQKWLLKVIKQELINILSQPNQEI--TSKRPLKVMVVGLQGSGKTTTCGKLAVWLKKQ 126 HSP 2 Score: 25.409 bits (54), Expect = 3.137e-15 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 660 KSCMLVAGDVYRPAAI 707 + MLVA D+YRPAAI Sbjct: 129 QKAMLVALDIYRPAAI 144
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15 Identity = 47/124 (37.90%), Postives = 72/124 (58.06%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L A KL T+ + I E +RDI+RAL++ADV++ +V + + ++A+ GV + ++KIV +EL K +G E + K +PTV+L G+QG GKTT AKLA Y + R Sbjct: 5 KLGKALNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGVSKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGIQGSGKTTSIAKLARYFQKR 127
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15 Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRERVACSLLEMCTD 696 M L+ L KL G + K+ + + +DI+RAL+++DV++ VV + + ++A+ L +G+ P + +++IV ELV L+G + EL + +P I++ GLQG GKTT +AKL +LK + + +CTD Sbjct: 1 MLEGLSESLTQTMKKLAGMSIIDKKTLKDVTKDIQRALIQSDVNVKVVFGLTKKIEKRALEEELPKGLSPKEHVMRIVYQELVNLIGEKPEELKINR-KPYKIMMLGLQGSGKTTTTAKLVKHLKKKGHTSAI---VCTD 136
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = 1 Query: 319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRP-TVILLAGLQGVGKTTVSAKLANYLKNR 657 K+KG + ++ + E +RD++RALLEADV + +V + + ++A+ GV L++IV +ELV+L+GGE +E L SR VI+L GL G+GKTT +AKLA YL+ + Sbjct: 14 KIKGASIIDEDFVKEVVRDVQRALLEADVDVKLVLELSKRIEKRALEEEPPAGVPKRDYLLRIVYEELVELLGGEKTEGLDIDLSRDVNVIMLVGLYGMGKTTTAAKLARYLQRK 128
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAE (Signal recognition 54 kDa protein OS=Pyrobaculum aerophilum GN=srp54 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14 Identity = 45/128 (35.16%), Postives = 74/128 (57.81%), Query Frame = 1 Query: 274 EMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 E+FG+L K++G + + + + E R+I+R LL+ADV L +V+ F + ++ G+ P + L+ ++ +ELVKL+GGE +P ++LL G++G GKTT +AKLA YL R Sbjct: 6 EIFGKLLE-------KIRGVDYIDEATLQELSREIQRTLLKADVPLDLVKSFTENAVKRIKEEKPPAGIPPREYLIYVLYEELVKLLGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTAAKLAKYLAKR 126
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.549e-14 Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L+S + K +T+T++++ +++IR ALL+ADV+L VV+ F++A+ ++ VG + G + L+K ++ EL+ ++ EL + RP I++ GLQG GKTT KLA +L+ + Sbjct: 6 LSSIVMRTMQKKINAQTITEKDVELVLKEIRIALLDADVNLLVVKNFIKAIRDKTVGQTIEPGQDLQKSLLKTIKTELINILSQPNQEL--NEKRPLKIMMVGLQGSGKTTTCGKLAYWLEKK 126 HSP 2 Score: 23.483 bits (49), Expect = 2.549e-14 Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 669 MLVAGDVYRPAAI 707 MLV D+YRPAAI Sbjct: 132 MLVGLDIYRPAAI 144
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRHO (Signal recognition 54 kDa protein OS=Pyrococcus horikoshii GN=srp54 PE=3 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 44/123 (35.77%), Postives = 71/123 (57.72%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L L A K+ ++ + + E +RDI+RALL+ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PTV+L G+QG GKTT AKLA Y + R Sbjct: 6 LGRALSNALKKIARAGSVDEALVKEVVRDIQRALLQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTVLLTVGVQGSGKTTTVAKLARYFQKR 127 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |