FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            K++G + + +  + E  R+I+R+LL+ADV L +V+ F  +  ++        G+ P + LV ++ +ELVKL+GGE         +P V+LL G++G GKTT +AKLA YL  R
Sbjct:   13 KIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEKPPAGIPPREYLVYVLYEELVKLLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKR 125          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            M G L   L     KL G   + K+ I E +++I+RAL+++DV++ +V    + + ++A+     +G+ P + ++ I+ +E+V L+GGE   L     +P  IL  GLQG GKTT   KL  YL+ +
Sbjct:    1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDI-DVKPYKILFLGLQGSGKTTTIGKLCRYLQKK 126          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L S L+ A  KL G   + ++ + E ++DI+RALL+ADV++ +V +    + E+A+   +  G+ P + ++KIV  EL+ ++G           +P  I++ GLQG GKTT ++KL+ Y + +
Sbjct:    5 KLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKEEVPPGMNPREHVIKIVYQELISIVGRSAD----IPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRK 124          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THENV (Signal recognition 54 kDa protein OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  271 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +E+FG+L         K++G   + +  + +  R+I+RALL+ADV L +V+ F  A  ++        G+ P + L+ ++ +ELVKL+GGE         +P V+LL G++G GKTT +AKLA  L  R
Sbjct:    5 SEVFGKLVE-------KIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGIPPREYLLYVLYEELVKLLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKR 126          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            K++  E + +  + E  R+I+R LL+ADV L +V+ F     ++        G+ P + L+ ++ +ELVKLMGGE         +P ++LL G++G GKTT SAKLA YL  R
Sbjct:   14 KIRDVEYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRIREEKPPAGIPPREYLIYVLYEELVKLMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKR 126          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P +I++ GLQG GKTT +AKLA Y + +
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQIIMMVGLQGSGKTTSTAKLARYFQRK 124          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 42/123 (34.15%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L   L     K+    ++ +  I E +RDI+RAL++ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PT++L+ G+QG GKTT  AKLA Y + R
Sbjct:    6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKR 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            K++G   + +  + E  R+I+RALL+ADV L +V+ F +   ++        G+ P + ++ I+ DELVKL+GGE         +P ++LL G++G GKTT +AKLA YL  R
Sbjct:   14 KIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYVLYILYDELVKLLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKR 126          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L   L  A  K+    ++ +  + E +RDI+RAL++ADV++ +V +  + +  +A+      G+   + ++KIV +EL K +G E   +   K +PT++L+ G+QG GKTT  AKLA + + R
Sbjct:    6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKR 127          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METMA (Signal recognition 54 kDa protein OS=Methanosarcina mazei GN=srp54 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P  I++ GLQG GKTT +AKLA Y + +
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGMNPREHVIRIVYQELMEIIGKGAD----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRK 124          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_PYRCJ6.406e-1438.05Signal recognition 54 kDa protein OS=Pyrobaculum c... [more]
SRP54_METS36.406e-1433.86Signal recognition 54 kDa protein OS=Methanobrevib... [more]
SRP54_METBU6.406e-1433.06Signal recognition 54 kDa protein OS=Methanococcoi... [more]
SRP54_THENV8.366e-1435.66Signal recognition 54 kDa protein OS=Thermoproteus... [more]
SRP54_PYRAR8.366e-1438.05Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_METBF8.366e-1433.87Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_PYRFU1.093e-1334.15Signal recognition 54 kDa protein OS=Pyrococcus fu... [more]
SRP54_PYRIL1.427e-1338.05Signal recognition 54 kDa protein OS=Pyrobaculum i... [more]
SRP54_PYRAB1.864e-1333.33Signal recognition 54 kDa protein OS=Pyrococcus ab... [more]
SRP54_METMA2.434e-1333.87Signal recognition 54 kDa protein OS=Methanosarcin... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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