FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRCJ (Signal recognition 54 kDa protein OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 K++G + + + + E R+I+R+LL+ADV L +V+ F + ++ G+ P + LV ++ +ELVKL+GGE +P V+LL G++G GKTT +AKLA YL R Sbjct: 13 KIRGVDYIDEAVLQELSREIQRSLLKADVPLELVKAFTDSAVKRIREEKPPAGIPPREYLVYVLYEELVKLLGGEQPAEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKYLAKR 125
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 M G L L KL G + K+ I E +++I+RAL+++DV++ +V + + ++A+ +G+ P + ++ I+ +E+V L+GGE L +P IL GLQG GKTT KL YL+ + Sbjct: 1 MLGNLGENLTKTMKKLVGISVIDKKTIEEVVKEIQRALIQSDVNIALVLDLSKKIKKRALEEEPPKGITPREHVITIIYEEMVNLLGGEAPGLDI-DVKPYKILFLGLQGSGKTTTIGKLCRYLQKK 126
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 41/124 (33.06%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L S L+ A KL G + ++ + E ++DI+RALL+ADV++ +V + + E+A+ + G+ P + ++KIV EL+ ++G +P I++ GLQG GKTT ++KL+ Y + + Sbjct: 5 KLGSSLQDALKKLVGAGRIDEKTVTEVVKDIQRALLQADVNVKLVMQMSSHIKERALKEEVPPGMNPREHVIKIVYQELISIVGRSAD----IPLKPQTIMMIGLQGSGKTTTTSKLSRYFQRK 124
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_THENV (Signal recognition 54 kDa protein OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 46/129 (35.66%), Postives = 74/129 (57.36%), Query Frame = 1 Query: 271 AEMFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +E+FG+L K++G + + + + R+I+RALL+ADV L +V+ F A ++ G+ P + L+ ++ +ELVKL+GGE +P V+LL G++G GKTT +AKLA L R Sbjct: 5 SEVFGKLVE-------KIRGVSYIDEATLQDLSREIQRALLKADVPLDMVKAFTDAAVKRIKEEKPPAGIPPREYLLYVLYEELVKLLGGEQPPEFKPTKKPYVVLLLGVEGSGKTTTAAKLAKLLVKR 126
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1 Query: 319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 K++ E + + + E R+I+R LL+ADV L +V+ F ++ G+ P + L+ ++ +ELVKLMGGE +P ++LL G++G GKTT SAKLA YL R Sbjct: 14 KIRDVEYIDEATLQEIAREIQRTLLKADVPLDLVKTFTDNAVKRIREEKPPAGIPPREYLIYVLYEELVKLMGGEQPAEFKPTKKPYIVLLLGVEGSGKTTTSAKLARYLMKR 126
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14 Identity = 42/124 (33.87%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P +I++ GLQG GKTT +AKLA Y + + Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEAPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQIIMMVGLQGSGKTTSTAKLARYFQRK 124
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13 Identity = 42/123 (34.15%), Postives = 71/123 (57.72%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L L K+ ++ + I E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PT++L+ G+QG GKTT AKLA Y + R Sbjct: 6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKR 127
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRIL (Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=srp54 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13 Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 1 Query: 319 KLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 K++G + + + E R+I+RALL+ADV L +V+ F + ++ G+ P + ++ I+ DELVKL+GGE +P ++LL G++G GKTT +AKLA YL R Sbjct: 14 KIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREEKPPAGIPPREYVLYILYDELVKLLGGEQPAEFKPVKKPYLVLLLGVEGSGKTTTAAKLARYLVKR 126
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13 Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L L A K+ ++ + + E +RDI+RAL++ADV++ +V + + + +A+ G+ + ++KIV +EL K +G E + K +PT++L+ G+QG GKTT AKLA + + R Sbjct: 6 LGKALSNALKKIARAGSVDEALVKEVVRDIQRALIQADVNVRLVLKLTKEIQRRALEEKPPAGISKKEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGVQGSGKTTTVAKLARHFQKR 127
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METMA (Signal recognition 54 kDa protein OS=Methanosarcina mazei GN=srp54 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13 Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P I++ GLQG GKTT +AKLA Y + + Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEDPPAGMNPREHVIRIVYQELMEIIGKGAD----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRK 124 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |