FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L++ L+ A  KL G+  + +  + E +RD++RALL +DV++ +V    + +  +++   L +G+   + +++IV  ELV L+G E         +P  IL+AGLQG GKTT + KL  Y + +
Sbjct:    6 LSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVYQELVNLVGKEAE----FSLKPQKILMAGLQGSGKTTTTGKLCRYFQRK 124          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +L   L+ A  KL G   + +  + E ++DI+RALL+ADV++ +V    Q + E+A+      G+ P + +++IV  EL++++G         + +P  I++ GLQG GKTT +AKLA Y + +
Sbjct:    5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRK 124          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ARCFU (Signal recognition 54 kDa protein OS=Archaeoglobus fulgidus GN=srp54 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13
Identity = 41/119 (34.45%), Postives = 77/119 (64.71%), Query Frame = 1
Query:  301 LEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L+    K+ G  ++ K+ + E +++I+RAL++ADV++  V+    A+ ++A+   ++  +   +Q++KIV +EL++ + GE  E+   K++   I+L GLQG GKTT +AK+A Y K+R
Sbjct:    6 LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPALNAKEQILKIVYEELLRGV-GEGLEIPLKKAK---IMLVGLQGSGKTTTTAKMAKYFKDR 120          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.174e-12
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  355 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651
            + E +RD+++ L++ADV++ +V    + + E+A+      G+   +  V IV +EL K  GG+    +  K +P V+LL GLQG GKTT +AKLA Y K
Sbjct:   24 VKEFIRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVNIVYEELSKFFGGDKKPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYK 122          

HSP 2 Score: 22.3274 bits (46), Expect = 2.174e-12
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  654 QGKSCMLVAGDVYRPAA 704
            +G    LVA D YRPAA
Sbjct:  124 EGYRVGLVAADTYRPAA 140          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  349 ENIV-EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651
            ENIV E +RD++RAL+ ADV++ +V    + + E+A+      G+   + LVK+  DELVKL GGE    V     P VI++ G+QG GKTT   KLA + +
Sbjct:   22 ENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEPEVKPPYTPYVIMMVGVQGSGKTTTVGKLAKFYR 123          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            L   L  A  K+     + K  + + +RDI+RALL+ADV++ +V      + E+A+      G+ P + ++ IV  EL+ L+ G  +++   K     I+L GLQG GKTT +AKLA Y + R
Sbjct:    6 LGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQELINLI-GRGTDIPLKKQ---TIMLVGLQGSGKTTTAAKLATYFQRR 124          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 45/139 (32.37%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678
            MF  L+ G + A NK++ ++   ++ +   + ++++ LL+ DV   V R  ++ V  Q    G+ +     QQ +  +   L++++  + S    FA++ PTV+L+AGLQG GKTT +AKLA+YLK + +     AC L
Sbjct:    1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639
            L S L    +KL+G+ TL+++++ E +++I+R+LL ADV + +V     ++ E+A+      G      ++KIV +E+V+L+G    E          I+LAGLQG GKTT +AK+A
Sbjct:    6 LGSSLRGTLDKLQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERALDEEPPAGTTARDHVLKIVYEEMVELVG----ESTALPLEEQTIVLAGLQGSGKTTTAAKMA 118          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639
            L S L  + +KL+G+  L ++++ E +++I+R+LL ADV + +V     ++ ++A G     G      +++IV +ELV L+G           +   ILLAGLQG GKTT +AK+A
Sbjct:    6 LGSSLRGSLDKLQGKSRLDEDDVEEIVKEIQRSLLSADVEVSLVMELSSSIEDRATGEEPPAGTSARDHVLRIVYEELVDLVGDSTD----LPLKSQTILLAGLQGSGKTTSAAKMA 118          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +  G+  A  K  G  T  +  + E ++DI++AL+ +DV + +V      + E+         +   +  +KIV DEL  L GG+    V  KS P VI+L G+QG GKTT + KLA + K R
Sbjct:    1 MLDGIRDAVRKFLGGNTSYEVAVEEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKR 123          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_METLZ3.179e-1333.33Signal recognition 54 kDa protein OS=Methanocorpus... [more]
SRP54_METAC3.179e-1333.87Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_ARCFU4.152e-1334.45Signal recognition 54 kDa protein OS=Archaeoglobus... [more]
SRP54_STAMF2.174e-1238.38Signal recognition 54 kDa protein OS=Staphylotherm... [more]
SRP54_HYPBU5.996e-1242.16Signal recognition 54 kDa protein OS=Hyperthermus ... [more]
SRP54_METTP7.830e-1234.96Signal recognition 54 kDa protein OS=Methanosaeta ... [more]
SRP54_HELPJ7.830e-1232.37Signal recognition particle protein OS=Helicobacte... [more]
SRP54_NATPD1.023e-1135.90Signal recognition 54 kDa protein OS=Natronomonas ... [more]
SRP54_HALWD1.744e-1135.04Signal recognition 54 kDa protein OS=Haloquadratum... [more]
SRP54_METS52.278e-1134.15Signal recognition 54 kDa protein OS=Metallosphaer... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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