FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METLZ (Signal recognition 54 kDa protein OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=srp54 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13 Identity = 41/123 (33.33%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L++ L+ A KL G+ + + + E +RD++RALL +DV++ +V + + +++ L +G+ + +++IV ELV L+G E +P IL+AGLQG GKTT + KL Y + + Sbjct: 6 LSNSLKDAMKKLAGKTVIDRAAVDELVRDLQRALLSSDVNVKLVMELSKQIKARSLDEDLPKGINAREHVLRIVYQELVNLVGKEAE----FSLKPQKILMAGLQGSGKTTTTGKLCRYFQRK 124
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13 Identity = 42/124 (33.87%), Postives = 73/124 (58.87%), Query Frame = 1 Query: 286 QLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 +L L+ A KL G + + + E ++DI+RALL+ADV++ +V Q + E+A+ G+ P + +++IV EL++++G + +P I++ GLQG GKTT +AKLA Y + + Sbjct: 5 KLGDSLQGALKKLIGAGRIDERTVNEVVKDIQRALLQADVNVKLVMGMSQRIKERAMKEEPPAGMNPREHVIRIVYQELMEIIGKGAE----IQLKPQTIMMVGLQGSGKTTSAAKLARYFQRK 124
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_ARCFU (Signal recognition 54 kDa protein OS=Archaeoglobus fulgidus GN=srp54 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.152e-13 Identity = 41/119 (34.45%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 301 LEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L+ K+ G ++ K+ + E +++I+RAL++ADV++ V+ A+ ++A+ ++ + +Q++KIV +EL++ + GE E+ K++ I+L GLQG GKTT +AK+A Y K+R Sbjct: 6 LKEVARKIAGSSSIDKKFVEEMVKEIQRALIKADVNVRQVKEISDAIKKRALSEDVLPALNAKEQILKIVYEELLRGV-GEGLEIPLKKAK---IMLVGLQGSGKTTTTAKMAKYFKDR 120
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_STAMF (Signal recognition 54 kDa protein OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=srp54 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.174e-12 Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 355 IVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651 + E +RD+++ L++ADV++ +V + + E+A+ G+ + V IV +EL K GG+ + K +P V+LL GLQG GKTT +AKLA Y K Sbjct: 24 VKEFIRDLQKELIKADVNVKLVLELTKKIRERALKEEPPPGITRREWFVNIVYEELSKFFGGDKKPDIKPKKKPWVMLLVGLQGSGKTTTAAKLAYYYK 122 HSP 2 Score: 22.3274 bits (46), Expect = 2.174e-12 Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 3 Query: 654 QGKSCMLVAGDVYRPAA 704 +G LVA D YRPAA Sbjct: 124 EGYRVGLVAADTYRPAA 140
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HYPBU (Signal recognition 54 kDa protein OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=srp54 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12 Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1 Query: 349 ENIV-EPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLK 651 ENIV E +RD++RAL+ ADV++ +V + + E+A+ G+ + LVK+ DELVKL GGE V P VI++ G+QG GKTT KLA + + Sbjct: 22 ENIVNEFIRDLQRALISADVNVRLVFNLTKRIRERALKEQPPPGLSRREWLVKLTYDELVKLFGGEYEPEVKPPYTPYVIMMVGVQGSGKTTTVGKLAKFYR 123
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 L L A K+ + K + + +RDI+RALL+ADV++ +V + E+A+ G+ P + ++ IV EL+ L+ G +++ K I+L GLQG GKTT +AKLA Y + R Sbjct: 6 LGGSLRGALKKIASATRVDKALVDDAVRDIQRALLQADVNVKLVMSLSNRIRERALNEKPPAGMNPREHVINIVYQELINLI-GRGTDIPLKKQ---TIMLVGLQGSGKTTTAAKLATYFQRR 124
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HELPJ (Signal recognition particle protein OS=Helicobacter pylori J99 GN=ffh PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12 Identity = 45/139 (32.37%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678 MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q G+ + QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + + AC L Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKAGGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_NATPD (Signal recognition 54 kDa protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=srp54 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11 Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639 L S L +KL+G+ TL+++++ E +++I+R+LL ADV + +V ++ E+A+ G ++KIV +E+V+L+G E I+LAGLQG GKTT +AK+A Sbjct: 6 LGSSLRGTLDKLQGKTTLSEDDVEEIVKEIQRSLLSADVDVDLVMDLSDSIRERALDEEPPAGTTARDHVLKIVYEEMVELVG----ESTALPLEEQTIVLAGLQGSGKTTTAAKMA 118
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALWD (Signal recognition 54 kDa protein OS=Haloquadratum walsbyi (strain DSM 16790) GN=srp54 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11 Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639 L S L + +KL+G+ L ++++ E +++I+R+LL ADV + +V ++ ++A G G +++IV +ELV L+G + ILLAGLQG GKTT +AK+A Sbjct: 6 LGSSLRGSLDKLQGKSRLDEDDVEEIVKEIQRSLLSADVEVSLVMELSSSIEDRATGEEPPAGTSARDHVLRIVYEELVDLVGDSTD----LPLKSQTILLAGLQGSGKTTSAAKMA 118
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_METS5 (Signal recognition 54 kDa protein OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=srp54 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11 Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 + G+ A K G T + + E ++DI++AL+ +DV + +V + E+ + + +KIV DEL L GG+ V KS P VI+L G+QG GKTT + KLA + K R Sbjct: 1 MLDGIRDAVRKFLGGNTSYEVAVEEFIKDIQKALISSDVQVKLVFSLTNKIKERLKKETPPSNLERREWFIKIVYDELSALFGGDKEPEVNPKSIPWVIMLVGVQGTGKTTTAGKLAYFYKKR 123 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |