FC923261
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11 Identity = 45/139 (32.37%), Postives = 79/139 (56.83%), Query Frame = 1 Query: 277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678 MF L+ G + A NK++ ++ ++ + + ++++ LL+ DV V R ++ V Q G+ + QQ + + L++++ + S FA++ PTV+L+AGLQG GKTT +AKLA+YLK + + AC L Sbjct: 1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_AERPE (Signal recognition 54 kDa protein OS=Aeropyrum pernix GN=srp54 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11 Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1 Query: 367 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 ++D++R L++ADV++ +V + + E+A+ GV ++KIV +ELVKL GG+ V P ++LL G+QG GKTT + KLA Y R Sbjct: 27 VKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRR 123
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALVO (Signal recognition 54 kDa protein OS=Halobacterium volcanii GN=srp54 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11 Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639 L S L + +KL+G+ L ++++ E +++I+R+LL ADV + +V ++ +A+ G ++KIV +ELV L+ GE +E+ I+LAGLQG GKTT SAK+A Sbjct: 6 LGSSLRGSLDKLRGKSRLDEDDVQEIVKEIQRSLLSADVDVSLVMDLSDSIKTRALEEEPPGGTSARDHVLKIVYEELVDLI-GESTEIPLESQ---TIMLAGLQGSGKTTTSAKMA 118
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 6.468e-11 Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657 + L+ A K G K + + +++++ +L+++DV++ +V Q + ++ + + + IV DEL KL GG+++ V K P VI+L G+QG GKTT + KLA + K + Sbjct: 1 MLDNLKDAVRKFLGSSNYDKA-VNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKK 122 HSP 2 Score: 24.2534 bits (51), Expect = 6.468e-11 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3 Query: 651 EQGKSCMLVAGDVYRPAA 704 ++G LVA DVYRPAA Sbjct: 121 KKGYKVGLVAADVYRPAA 138
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11 Identity = 42/117 (35.90%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639 L S L + L+G+ L++E+I + +++I+R+LL+ADV + +V+ ++ +A+ G P +++IV +ELV L+ GE +EL + I+LAGL G GKTT +AK+A Sbjct: 6 LGSSLRGTLDDLRGKSRLSEEDIEDIVKEIQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYEELVDLV-GESTELPLEEQ---TIMLAGLYGSGKTTTAAKMA 118 The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bpback to top |