FC923261

Overview
NameFC923261
Unique NameFC923261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HELPY (Signal recognition particle protein OS=Helicobacter pylori GN=ffh PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 45/139 (32.37%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  277 MFGQLTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSE-LVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNRER----VACSL 678
            MF  L+ G + A NK++ ++   ++ +   + ++++ LL+ DV   V R  ++ V  Q    G+ +     QQ +  +   L++++  + S    FA++ PTV+L+AGLQG GKTT +AKLA+YLK + +     AC L
Sbjct:    1 MFQALSDGFKNALNKIRFQDD--EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGK-----QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_AERPE (Signal recognition 54 kDa protein OS=Aeropyrum pernix GN=srp54 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  367 MRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            ++D++R L++ADV++ +V    + + E+A+      GV     ++KIV +ELVKL GG+    V     P ++LL G+QG GKTT + KLA Y   R
Sbjct:   27 VKDLQRELIKADVNVKLVLNVTRRIKERALKEEPPPGVTRRDWMIKIVYEELVKLFGGDQEPQVDPPKTPWIVLLVGVQGSGKTTTAGKLAYYYVRR 123          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALVO (Signal recognition 54 kDa protein OS=Halobacterium volcanii GN=srp54 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639
            L S L  + +KL+G+  L ++++ E +++I+R+LL ADV + +V     ++  +A+      G      ++KIV +ELV L+ GE +E+         I+LAGLQG GKTT SAK+A
Sbjct:    6 LGSSLRGSLDKLRGKSRLDEDDVQEIVKEIQRSLLSADVDVSLVMDLSDSIKTRALEEEPPGGTSARDHVLKIVYEELVDLI-GESTEIPLESQ---TIMLAGLQGSGKTTTSAKMA 118          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_SULTO (Signal recognition 54 kDa protein OS=Sulfolobus tokodaii GN=srp54 PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 6.468e-11
Identity = 36/123 (29.27%), Postives = 66/123 (53.66%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLANYLKNR 657
            +   L+ A  K  G     K  + + +++++ +L+++DV++ +V    Q + ++         +   +  + IV DEL KL GG+++  V  K  P VI+L G+QG GKTT + KLA + K +
Sbjct:    1 MLDNLKDAVRKFLGSSNYDKA-VNDFIKELQISLIKSDVNVKLVSNLTQKIKDRLEKEKPPTAIERREWFISIVYDELSKLFGGDINPEVMPKKIPYVIMLVGVQGSGKTTTAGKLALFYKKK 122          

HSP 2 Score: 24.2534 bits (51), Expect = 6.468e-11
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  651 EQGKSCMLVAGDVYRPAA 704
            ++G    LVA DVYRPAA
Sbjct:  121 KKGYKVGLVAADVYRPAA 138          
BLAST of FC923261 vs. ExPASy Swiss-Prot
Match: SRP54_HALMA (Signal recognition 54 kDa protein OS=Haloarcula marismortui GN=srp54 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 42/117 (35.90%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  289 LTSGLEAAWNKLKGEETLTKENIVEPMRDIRRALLEADVSLPVVRRFVQAVSEQAVGVGLIRGVRPDQQLVKIVRDELVKLMGGEVSELVFAKSRPTVILLAGLQGVGKTTVSAKLA 639
            L S L    + L+G+  L++E+I + +++I+R+LL+ADV + +V+    ++  +A+      G  P   +++IV +ELV L+ GE +EL   +     I+LAGL G GKTT +AK+A
Sbjct:    6 LGSSLRGTLDDLRGKSRLSEEDIEDIVKEIQRSLLQADVDVGLVQDLSNSIETRALDEEPPAGTTPRDWVLRIVYEELVDLV-GESTELPLEEQ---TIMLAGLYGSGKTTTAAKMA 118          
The following BLAST results are available for this feature:
BLAST of FC923261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
SRP54_HELPY2.278e-1132.37Signal recognition particle protein OS=Helicobacte... [more]
SRP54_AERPE2.976e-1138.14Signal recognition 54 kDa protein OS=Aeropyrum per... [more]
SRP54_HALVO5.076e-1136.75Signal recognition 54 kDa protein OS=Halobacterium... [more]
SRP54_SULTO6.468e-1129.27Signal recognition 54 kDa protein OS=Sulfolobus to... [more]
SRP54_HALMA8.658e-1135.90Signal recognition 54 kDa protein OS=Haloarcula ma... [more]

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Properties
Property NameValue
Genbank descriptionC31702G08EF StrClemenN Citrus clementina cDNA clone C31702G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923261 ID=FC923261; Name=FC923261; organism=Citrus clementina; type=EST; length=708bp
GAGACGGAAGCGGGCCGTGGAGTGGCTATGGAAGCAGTGCAATTTTCGAC
CGTTGCTTCCCGCCATTACTCAGCGACTGGCAAAACCTTCTACAATTCCA
GAATATCGGCGGGAAAATCCACTAAGTTTGTCTCCTCGTGGGCCGCCTCC
AGCGACTCTACTCGACTCTCTTCCACTTCGAGAAATTTGTTCACCAGAGA
GACGTGGGGCTTGATAGACTCCAAAAGTGTTACTATTAGAAGAAATGGTA
GAAGACGTTTGGTAGTGAGAGCAGAAATGTTTGGGCAGTTAACAAGCGGC
CTCGAGGCAGCTTGGAACAAGCTCAAAGGAGAAGAGACTTTAACCAAGGA
GAATATTGTGGAACCCATGAGAGACATTAGAAGAGCTCTTCTGGAAGCAG
ATGTAAGTCTTCCTGTTGTTAGAAGGTTTGTCCAAGCAGTCAGTGAACAA
GCGGTTGGTGTGGGCCTGATTCGGGGAGTAAGACCTGATCAGCAATTGGT
CAAGATTGTTCGTGATGAACTTGTGAAATTGATGGGTGGAGAAGTGTCTG
AGTTAGTTTTTGCAAAATCAAGACCCACTGTGATACTACTGGCTGGTCTA
CAAGGAGTTGGAAAGACAACTGTTTCAGCAAAGTTAGCTAATTATCTTAA
GAACAGGGAAAGAGTTGCATGCTCGTTGCTGGAGATGTGTACAGACCTGC
TGCTATTG
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