FC923278

Overview
NameFC923278
Unique NameFC923278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE+LG+  GA   EIK AYRKLAR  HPDV   +  E    KF ++ EAY+ LS+P+KRA YDR
Sbjct:    6 YEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEE---KFKEVKEAYDVLSEPQKRAQYDR 66          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCN (Chaperone protein dnaJ OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE+LG+   A+  EIK AYR+LA+  HPDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGVSKSASKDEIKKAYRRLAKKYHPDV---SKEENAVEKFKEVQEAYEVLSDEQKRAQYDQ 67          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+  GA  +EIK AYR+LAR  HPDV   S + ++A KF ++ EAY  LSD +KRA YDR
Sbjct:    7 YEILGVDRGADKKEIKKAYRRLARKYHPDV---SDDPDAAEKFKEISEAYAVLSDDEKRARYDR 67          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+   AT +EIK AYR+LA+  HPD  A   N+ +  KF +++EAYE LSDP+KR  YD+
Sbjct:    8 YEILGVPRNATQEEIKRAYRRLAKQYHPD--ANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQ 69          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_THETN (Chaperone protein dnaJ OS=Thermoanaerobacter tengcongensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  249 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            LYEILG+   A+ +EIK AYR+LA+  HPD+     ++ +  KF +++EAYE LSDP+KRA YD+
Sbjct:    6 LYEILGVDRNASQEEIKKAYRRLAKKYHPDL--NPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 68          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  237 GPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            G    YEILG+  GA+  EIK AYRKLA+  HPD+     ++ +  KF +++EAYE LSDP+KRA YD+
Sbjct:    3 GKRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDM--NPGDKAAEAKFKEINEAYEVLSDPQKRARYDQ 69          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  234 PGPGSLYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            P     YEILG+   AT  EIK AYR+L R  HPD+   +++ ++  KF +++EAYE LSDP+KRA YD+
Sbjct:    2 PTKKDYYEILGVPRNATQDEIKQAYRRLVRQYHPDL---NKDPSAHEKFKEINEAYEVLSDPQKRAQYDQ 68          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_DEIRA (Chaperone protein dnaJ OS=Deinococcus radiodurans GN=dnaJ PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE+LG+   A+  EIK+AYRKLA  LHPD   +++ E +A KF ++ EAY  LSD +KRA YDR
Sbjct:    4 YELLGVSRTASADEIKSAYRKLALKLHPD---RNKEEGAAEKFAQVSEAYSVLSDTEKRAHYDR 64          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/65 (52.31%), Postives = 44/65 (67.69%), Query Frame = 3
Query:  249 LYEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            LYE+LG+   A   EIK AYRKLAR  HPDV  ++  E    KF ++ +AY+ LS+P+KRA YDR
Sbjct:    5 LYEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEE---KFKEVKDAYDILSEPQKRAQYDR 66          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_BACST (Chaperone protein dnaJ OS=Bacillus stearothermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+   AT +EIK AYRKL++  HPDV   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDV---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC923278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DNAJ_BRECH2.278e-1154.69Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]
DNAJ_BACCN2.278e-1153.13Chaperone protein dnaJ OS=Bacillus cereus subsp. c... [more]
DNAJ_METTH3.886e-1156.25Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_CALS83.886e-1153.13Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ_THETN5.076e-1150.77Chaperone protein dnaJ OS=Thermoanaerobacter tengc... [more]
DNAJ_CLOTH5.076e-1150.72Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
DNAJ_DICT66.629e-1148.57Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]
DNAJ_DEIRA6.629e-1153.13Chaperone protein dnaJ OS=Deinococcus radiodurans ... [more]
DNAJ_BREBN6.629e-1152.31Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
DNAJ_BACST6.629e-1153.13Chaperone protein dnaJ OS=Bacillus stearothermophi... [more]

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Properties
Property NameValue
Genbank descriptionC31703A05EF StrClemenN Citrus clementina cDNA clone C31703A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923278 ID=FC923278; Name=FC923278; organism=Citrus clementina; type=EST; length=712bp
GTCCGATACTACTCTCATCTTCAAACAAAACACAAGAAGTAATCTAATCA
TCGATTCAATCCATCATGTCTACTCTTGCATCTTCAGCCCATCTGATTGG
CCCGGGATTTATCACCAACGAGACTCATTCACAATCACAGCCCACGTCTG
TCAAATTCCGCCCACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGCG
GAGAGAACAAGAACCCATCATCACATTACTTCTCCTGGACCCGGCTCACT
CTACGAAATCCTGGGGATTCAGACGGGTGCCACGTGTCAGGAAATCAAGA
CTGCTTATCGGAAATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCTAAG
AGTCAAAATGAGAATTCAGCATATAAGTTCATGAAATTACACGAAGCTTA
CGAAACTCTATCAGATCCCAAGAAGCGTGCGGACTACGATCGTACCCTTT
TCAGGAGAAGAAGCCCATCGAGTTCCCCATTTGCTGTCTCGGGAGTGGCA
AATACGATGGCCACTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGCG
GACATGGGAGACTGATCAGTGCTGGTAGAAAATAAAATACATAGCTGCAA
CTGCAAGATTATGTTATATGATCTTAGCTGTTCAGGAATTAGGATTAGAG
ATGCTGCCCTTTAACGTCTGGGGATTAATGCTACGTGTGTAGATATTTAT
GATTGTAATTGA
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