FC923278

Overview
NameFC923278
Unique NameFC923278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE+LG+Q  A+  EIK A+R+LAR  HPDV   ++  ++  KF +++EAYE LSDP+KR+ YDR
Sbjct:    8 YEVLGVQRNASQDEIKKAFRRLARQYHPDV---NKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YE LG+Q GA  +E+K+A+RKLA   HPD      + +  +KF +++EAYETL DP+KRA YDR
Sbjct:    6 YETLGVQKGADEKELKSAFRKLAMQFHPD--RNPGDHSCEHKFKEINEAYETLKDPQKRAAYDR 67          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+   AT  EIK AYRKL++  HPDV   ++  ++A KF ++ EAYE LSD +KRA YDR
Sbjct:    7 YEILGVSKNATKDEIKKAYRKLSKQYHPDV---NKAPDAAEKFKEIKEAYEVLSDDEKRARYDR 67          
BLAST of FC923278 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 3
Query:  252 YEILGIQTGATCQEIKTAYRKLARVLHPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 443
            YEILG+   AT +EIK AYRKL++  HPD+   ++  ++A KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDI---NKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC923278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DNAJ_ROSS18.658e-1151.56Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS8.658e-1151.56Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_RHILO8.658e-1151.56Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_GEOSW8.658e-1151.56Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_GEOKA8.658e-1154.69Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_BACTR8.658e-1151.56Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]

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Properties
Property NameValue
Genbank descriptionC31703A05EF StrClemenN Citrus clementina cDNA clone C31703A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923278 ID=FC923278; Name=FC923278; organism=Citrus clementina; type=EST; length=712bp
GTCCGATACTACTCTCATCTTCAAACAAAACACAAGAAGTAATCTAATCA
TCGATTCAATCCATCATGTCTACTCTTGCATCTTCAGCCCATCTGATTGG
CCCGGGATTTATCACCAACGAGACTCATTCACAATCACAGCCCACGTCTG
TCAAATTCCGCCCACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGCG
GAGAGAACAAGAACCCATCATCACATTACTTCTCCTGGACCCGGCTCACT
CTACGAAATCCTGGGGATTCAGACGGGTGCCACGTGTCAGGAAATCAAGA
CTGCTTATCGGAAATTAGCAAGAGTTTTGCACCCGGATGTTGCCGCTAAG
AGTCAAAATGAGAATTCAGCATATAAGTTCATGAAATTACACGAAGCTTA
CGAAACTCTATCAGATCCCAAGAAGCGTGCGGACTACGATCGTACCCTTT
TCAGGAGAAGAAGCCCATCGAGTTCCCCATTTGCTGTCTCGGGAGTGGCA
AATACGATGGCCACTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGCG
GACATGGGAGACTGATCAGTGCTGGTAGAAAATAAAATACATAGCTGCAA
CTGCAAGATTATGTTATATGATCTTAGCTGTTCAGGAATTAGGATTAGAG
ATGCTGCCCTTTAACGTCTGGGGATTAATGCTACGTGTGTAGATATTTAT
GATTGTAATTGA
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