FC923279

Overview
NameFC923279
Unique NameFC923279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNP6 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 76/180 (42.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   49 GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDIS---TDVKARGQVLGEDGVRVHSMVLPRL 576
            G+DIG +  +  PLE+PV +DL  +L   SQ +   VV+DFT    +YDNV++A A+G+R VV    +  E +  L+ F +KAS+GCL+ P  SIG +LL QAAI AS  Y +VEI+E   + + D PS  A + A  L+ LG+ +N   ++   T   ARG V G + +R+HS+ LP L
Sbjct:   44 GQDIGEIVGLG-PLEVPVTNDLEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAEKASVGCLVIPNFSIGMVLLMQAAIQASRFYDHVEILELHHDQKADAPSGTAIKTAQMLAELGKTFNPPKVTEKETMPGARGAV-GPENIRIHSVRLPGL 221          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNE7 (Dihydrodipicolinate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=dapB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 76/180 (42.22%), Postives = 110/180 (61.11%), Query Frame = 1
Query:   49 GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDIS---TDVKARGQVLGEDGVRVHSMVLPRL 576
            G+DIG +  +  PLE+PV +DL  +L   SQ +   VV+DFT    +YDNV++A A+G+R VV    +  E +  L+ F +KAS+GCL+ P  SIG +LL QAAI AS  Y +VEI+E   + + D PS  A + A  L+ LG+ +N   ++   T   ARG V G + +R+HS+ LP L
Sbjct:   44 GQDIGEIVGLG-PLEVPVTNDLEGMLCLASQEREVPVVVDFTHPDCIYDNVRKAIAYGVRPVVGTTGLNNEQLQELAEFAEKASVGCLVIPNFSIGMVLLMQAAIQASRFYDHVEILELHHDQKADAPSGTAIKTAQMLAELGKTFNPPKVTEKETMPGARGAV-GPENIRIHSVRLPGL 221          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_THEEB (Dihydrodipicolinate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.344e-28
Identity = 74/186 (39.78%), Postives = 103/186 (55.38%), Query Frame = 1
Query:   28 AIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRL 576
            A+D   VGEDIG    +   LEIP+   L  V  + +Q K   V++DFT    VY+NV+ A A+G+  VV    +  E +  L+ F DKA MG +IAP  SIG +LLQ+AAI AS ++ +VEI+E   N + D PS  A Q A  L+ LG+ +N   +      RG         +R+HS+ LP L
Sbjct:   40 AVDRKQVGEDIGEALGLGT-LEIPISGSLQEVCVAAAQEKQPVVMVDFTHPQAVYENVRMAIAYGVYPVVGTTGLSPEQIEELAEFADKADMGAVIAPNFSIGMVLLQEAAIRASQYFDHVEIIELHHNQKADAPSGTALQTAQRLAELGKTFNPPQVQESEHLRGARGAFAAAEIRIHSVRLPGL 224          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNP2 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 71/193 (36.79%), Postives = 113/193 (58.55%), Query Frame = 1
Query:   13 MEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRL 576
            ME+  A+D +   +G+D G +      +E+P+++DL   L   +QSK + V++DFT  S VY N + A A+G+R VV    +  E ++ L  F +KAS G LI P  SIG +LLQQA++ A+ ++ +VEI+E   N + D PS  A + A  L+ LG+ +N  ++    +  G    + ED +R+HS+ LP L
Sbjct:   32 MEIIAAVDKNPALLGQDAGEIAGCGA-VEVPIVNDLEASLVMATQSKIQGVMVDFTHPSGVYANTRAAIAYGVRPVVGTTGLSEEQINDLKEFAEKASTGALIIPNFSIGVVLLQQASLQAAKYFDHVEIIELHHNQKADAPSGTAIKTAQMLAELGKQFNPAEVEEKEEMPGAKGAVTEDNIRIHSVRLPGL 223          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_GLOVI (Dihydrodipicolinate reductase OS=Gloeobacter violaceus GN=dapB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 69/192 (35.94%), Postives = 110/192 (57.29%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTD---VKARGQVLGEDGVRVHSMVLPRL 576
            M V GA+D   + ED G +  +  P+++ V  +L +    ++Q +A  V++DFT    +YD V+ A A+G+R VV    +  E +  L+ F DKAS GC++AP  +IG ILLQQA + A+ ++ +VEI+E   N + D PS  A   A  ++  G+ +N  ++S       ARG +   D +R+HS+ LP L
Sbjct:   28 MAVVGAVDRSHIDEDAGELAGIG-PIDVLVTDNLEITCAMVAQERAPGVMVDFTHPRGIYDRVRSAIAYGVRPVVGTTGLPPEHIEELAEFADKASTGCIVAPNFAIGMILLQQACLRAAEYFDHVEIIELHHNRKADAPSGTALATAQMIATTGKTFNVPEVSESELVAGARGGMTPGD-IRIHSLRLPGL 217          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_ACAM1 (Dihydrodipicolinate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=dapB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 72/184 (39.13%), Postives = 108/184 (58.70%), Query Frame = 1
Query:   37 SHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            S   GE +G+       L I + ++L  VL + +Q K   V++DFT  S+VY N++ A A+G+  V+    +  E ++ L+ F +KASMGCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N + D PS  A + A  L +LG+ YN    E+      ARG  LG + +R+HS+ LP L
Sbjct:   46 SLDAGELVGL-----DTLNIELTNELEPVLAAAAQEKQPCVMVDFTHPSSVYSNIRSAIAYGVFPVIGTTGLSDEQMNDLTEFTEKASMGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAVKTAQLLGDLGKTYNPALVEEKEHLAGARGS-LGSENIRIHSIRLPGL 223          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNPX (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain WH8102) GN=dapB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.988e-21
Identity = 68/195 (34.87%), Postives = 106/195 (54.36%), Query Frame = 1
Query:   19 VAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPRL 576
            + GAID+     G DIG+   + + LE+ V +D    L ++SQS    +A AV++DFT  S VY++ + A A+G+  V+    +  E +S L  F  KAS+G  + P  S+G +LLQQAA +A+  Y + E+ E   N + D PS    + A  +  LG+ +N  ++       G   G  E G+R+HS+ LP L
Sbjct:   32 LVGAIDNTPGKEGSDIGLELGLGE-LEVAVTADFEGCLCAVSQSVRDAEAGAVLVDFTHPSVVYEHTRAAIAYGVHPVIGTTGLSPEQLSDLCQFAAKASIGGAVIPNFSVGMVLLQQAAAAAARFYDHAELTELHHNCKADAPSGTCIKTAELMEELGKSFNPAEVDEHESLAGSRGGRRESGLRLHSLRLPGL 225          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNR3 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain RCC307) GN=dapB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.903e-21
Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 1
Query:   16 EVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRL 576
            ++ GAID+     GED+G+   + + LE+ +  D    L   SQ    AV++DFT    VY++ + A A+G+  V+    +  E +  L++F  KASMG  + P  S+G +LLQQAA +A+  Y + E+VE   N + D PS    + A  +  LG+ +N +++       G    L   G+R+HS+ LP L
Sbjct:   31 QLVGAIDTCPGREGEDVGLALGLGE-LEVALTQDFEGALCLASQQHPGAVLVDFTHPKVVYEHTRAAIAYGVTPVIGTTGLAPEQLQELASFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDHAELVELHHNRKADAPSGTCIKTAELMEELGKQFNAQEVEEHETLEGSRGGLRPSGLRLHSIRLPGL 221          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_PROMA (Dihydrodipicolinate reductase OS=Prochlorococcus marinus GN=dapB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.903e-21
Identity = 67/207 (32.37%), Postives = 109/207 (52.66%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVL----GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRLPSSTTV 594
            +S   E+  AID+ +   G DIG    M+Q +++ V +DL   L     S+  S   AV+IDFT  + VY++ + + A+G+  V+    + +  +  L  F +KAS+G  I P  S+G +LLQQAA +A+  Y   E+ ES  N + D PS    + A  +  +G+ +N+  I      +G    L E G+R+HS+ LP + +   V
Sbjct:   25 KSNDCELVAAIDNANEMEGVDIGTALGMDQ-MDVAVTADLEGSLCVASQSVRNSSGNAVLIDFTHPNVVYEHSRASIAYGVHPVIGTTGLSIVQLEELREFANKASIGAAIIPNFSVGMVLLQQAAAAAASFYDYAELTESHHNQKADAPSGTCIKTAEIIEEIGKSFNKTTIKEQESIKGSRGGLRESGLRLHSVRLPGIVAQQQV 230          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_PROMM (Dihydrodipicolinate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.136e-20
Identity = 67/202 (33.17%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   16 EVAGAIDSH------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR------AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQ--VLGEDGVRVHSMVLPRL 576
            E+ GA+D+        +GE++G+       L++ + SD+   L S+SQS  R      AV++DFT  S VY++ + A A+G+  V+    +  + +  LS F  KASMG  + P  S+G +LLQQAA +A+  Y N E+ E   N + D PS    + A  +  LG+ +N  ++       G    L   G+R+HS+ LP L
Sbjct:   35 ELVGAVDTTPGKEGVEIGEELGIGV-----LDVALTSDIEACLCSVSQSFHRTGPGQGAVLVDFTHPSVVYEHTRAAFAYGVHPVIGTTGLSHQQLVDLSEFAAKASMGGAVIPNFSVGMVLLQQAAAAAARFYDNAELTELHHNRKADAPSGTCIKTAEMMEELGKSFNSPEVDEHESLTGSRGGLRASGLRLHSLRLPGL 231          
The following BLAST results are available for this feature:
BLAST of FC923279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DAPB_SYNP61.480e-2842.22Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_SYNE71.480e-2842.22Dihydrodipicolinate reductase OS=Synechococcus elo... [more]
DAPB_THEEB7.344e-2839.78Dihydrodipicolinate reductase OS=Thermosynechococc... [more]
DAPB_SYNP21.060e-2636.79Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_GLOVI1.385e-2635.94Dihydrodipicolinate reductase OS=Gloeobacter viola... [more]
DAPB_ACAM15.263e-2639.13Dihydrodipicolinate reductase OS=Acaryochloris mar... [more]
DAPB_SYNPX2.988e-2134.87Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_SYNR33.903e-2133.33Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_PROMA3.903e-2132.37Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]
DAPB_PROMM1.136e-2033.17Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31703A10EF StrClemenN Citrus clementina cDNA clone C31703A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923279 ID=FC923279; Name=FC923279; organism=Citrus clementina; type=EST; length=597bp
GAAAGCAGAGGGATGGAGGTTGCTGGCGCCATCGATTCCCATTCTGTAGG
AGAAGATATTGGAATGGTGTGTGATATGGAGCAGCCTCTGGAAATTCCTG
TAATGAGTGACCTCACAATGGTATTAGGTTCCATATCTCAGTCAAAAGCA
AGAGCAGTCGTCATTGATTTCACAGATGCTTCAACAGTTTATGACAATGT
GAAACAGGCAACAGCATTTGGAATGAGAAGCGTGGTTTACGTGCCACACA
TTCAGCTGGAGACAGTTTCAGCATTATCTGCATTCTGTGACAAGGCCAGC
ATGGGATGTCTTATTGCACCAACTCTCTCAATAGGATCTATTCTTCTCCA
GCAAGCCGCCATTTCTGCCTCCTTCCACTACAAGAATGTGGAAATTGTAG
AATCAAGGCCAAATGCAAGAGATTTTCCATCACCAGATGCAACTCAAATC
GCCAACAACCTCTCCAACCTTGGTCAGATCTACAACAGAGAAGATATTTC
AACAGACGTGAAAGCAAGGGGTCAAGTCCTGGGAGAAGATGGAGTTCGTG
TGCACAGTATGGTCCTTCCAAGGCTTCCATCTAGTACAACGGTTTAC
back to top