FC923279

Overview
NameFC923279
Unique NameFC923279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_COXBR (Dihydrodipicolinate reductase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=dapB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   94 IPVMSDLTMVLGS--------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTV 594
            I   SDL +V G+          Q+    VVIDFT   +V+ N +     G R V+    + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LP L S  +V
Sbjct:   22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSV 193          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_COXBN (Dihydrodipicolinate reductase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dapB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   94 IPVMSDLTMVLGS--------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTV 594
            I   SDL +V G+          Q+    VVIDFT   +V+ N +     G R V+    + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LP L S  +V
Sbjct:   22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSV 193          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_COXB2 (Dihydrodipicolinate reductase OS=Coxiella burnetii (strain CbuG_Q212) GN=dapB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   94 IPVMSDLTMVLGS--------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTV 594
            I   SDL +V G+          Q+    VVIDFT   +V+ N +     G R V+    + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LP L S  +V
Sbjct:   22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSV 193          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_COXB1 (Dihydrodipicolinate reductase OS=Coxiella burnetii (strain CbuK_Q154) GN=dapB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   94 IPVMSDLTMVLGS--------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTV 594
            I   SDL +V G+          Q+    VVIDFT   +V+ N +     G R V+    + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LP L S  +V
Sbjct:   22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSV 193          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_DESHY (Dihydrodipicolinate reductase OS=Desulfitobacterium hafniense (strain Y51) GN=dapB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 54/192 (28.12%), Postives = 99/192 (51.56%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGE-DGVRVHSMVLP 570
            +   M++ GA D+   G DIG +  M  PL I +   L +    + +++A  +++DFT+  +V  N K A A G+  V+    +    +S +    D+  +G  IAP  +IG+IL+ + A  A+ ++ +VEI+E   + + D PS  A +    +S + +   +   +   K +G   G+ DG+ +HS+ LP
Sbjct:   25 DQEDMQLVGASDARQQGRDIGELLAMA-PLGIEITGPLEVA--HLKETRAD-IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVDQTKVGAFIAPNFAIGAILMMRFAQEAAKYFPHVEIIELHHDQKLDAPSGTALKTVEWISEVRKPLVQGHPNEYEKIKGSRGGDVDGIHIHSVRLP 212          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_DESHD (Dihydrodipicolinate reductase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dapB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 54/192 (28.12%), Postives = 99/192 (51.56%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGE-DGVRVHSMVLP 570
            +   M++ GA D+   G DIG +  M  PL I +   L +    + +++A  +++DFT+  +V  N K A A G+  V+    +    +S +    D+  +G  IAP  +IG+IL+ + A  A+ ++ +VEI+E   + + D PS  A +    +S + +   +   +   K +G   G+ DG+ +HS+ LP
Sbjct:   25 DQEDMQLVGASDARQQGRDIGELLAMA-PLGIEITGPLEVA--HLKETRAD-IMVDFTNPQSVLKNAKCALAAGVVPVLGTTGLDEADISEIRDLVDQTKVGAFIAPNFAIGAILMMRFAQEAAKYFPHVEIIELHHDQKLDAPSGTALKTVEWISEVRKPLVQGHPNEYEKIKGSRGGDVDGIHIHSVRLP 212          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISW6 (Dihydrodipicolinate reductase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dapB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 51/191 (26.70%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGE--DGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV ++L+ +L           V+DFT     Y N K     G+R+VV       E + +L    +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS  A + A  ++   + + ++    +V+      G   +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNIREIVEFSS-LDVPVYANLSEMLEEAKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQIESLREIAETKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTAVKTAEMMAE-NRTFVKQGAEDEVELMEGARGAEYEGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_OCEIH (Dihydrodipicolinate reductase OS=Oceanobacillus iheyensis GN=dapB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 51/190 (26.84%), Postives = 92/190 (48.42%), Query Frame = 1
Query:   19 VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +   +D    G ++G +      L++P+ +D+   L    +     V +D T     Y + K A  + +R VV       E +S L     +   GC+IAP  +IG++L+ + +  A+ ++ NVEI+E   + + D PS  A + A  + ++ +   +   ++  T   ARG  +  DG+R+HSM LP L
Sbjct:   30 LVACLDHKHDGLNLGELEQFSDDLQVPIYTDIDSCL----KQHQADVFVDLTTPEVGYKHTKTALEYKVRPVVGTTGFTDEQLSELKELSKQQQRGCIIAPNFAIGAVLMMKFSKMAAKYFPNVEIIEKHHDQKLDAPSGTAKKTAELIQDVRESQKQGHPKEEETLPGARGADM--DGMRIHSMRLPGL 213          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_MOOTA (Dihydrodipicolinate reductase OS=Moorella thermoacetica (strain ATCC 39073) GN=dapB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 52/191 (27.23%), Postives = 89/191 (46.60%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLP 570
            ++  + V GA+D   VG DIG +  +  P  + +  DL  V+ S        V++DFT A+    N + A   G+  V+    I LE +  L   C+   +G ++AP  S+G+IL+   A  A+ ++   EI+E   + + D PS  A + A  ++           + +  A  +     G+ VHS+ LP
Sbjct:   26 QTEDIAVVGAVDRREVGVDIGSLNGLP-PAGVIIQEDLAGVIASARPE----VMVDFTVAAAALANARLAVEQGVSPVIGTTGISLERLDELHQLCEARQVGAVVAPNFSLGAILMMHFAEEAARYFPRAEIIEIHHDQKIDAPSGTALKTAELMAARVNRPLTPSPAEEKVAGARGATYQGLAVHSVRLP 211          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_DICT6 (Dihydrodipicolinate reductase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dapB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQ-PLEIPVMSDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYN--REDISTDVKARGQVLGE-DGVRVHSMVLPRL 576
            +E+ GAID +  GE    +   ++  LE         VLGSI + K    V +DFT+A   Y N+K+    G R VV    +  E ++       K +   LIAP  ++G++L+ Q A     ++ +VEI+E   N + D PS  A   A  LS   + +N   +D +   K  G   G+ D + +HS+ LP L
Sbjct:   27 IELVGAIDPYFKGEKYEKIIGTDKISLE---------VLGSIEELKEDFDVAVDFTNAEAAYQNIKKILQMGKRMVVGTTGLTQEMINEFKDLAVKNNTAILIAPNFALGAVLMIQLAKQVVKYFPDVEIIELHHNEKADAPSGTAILTAEILSEEMKKHNLTHKDATKVEKLPGSRGGKLDSINIHSVRLPGL 211          
The following BLAST results are available for this feature:
BLAST of FC923279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DAPB_COXBR2.995e-1328.98Dihydrodipicolinate reductase OS=Coxiella burnetii... [more]
DAPB_COXBN2.995e-1328.98Dihydrodipicolinate reductase OS=Coxiella burnetii... [more]
DAPB_COXB22.995e-1328.98Dihydrodipicolinate reductase OS=Coxiella burnetii... [more]
DAPB_COXB12.995e-1328.98Dihydrodipicolinate reductase OS=Coxiella burnetii... [more]
DAPB_DESHY6.673e-1328.13Dihydrodipicolinate reductase OS=Desulfitobacteriu... [more]
DAPB_DESHD6.673e-1328.13Dihydrodipicolinate reductase OS=Desulfitobacteriu... [more]
DAPB_LISW68.715e-1326.70Dihydrodipicolinate reductase OS=Listeria welshime... [more]
DAPB_OCEIH4.325e-1226.84Dihydrodipicolinate reductase OS=Oceanobacillus ih... [more]
DAPB_MOOTA4.325e-1227.23Dihydrodipicolinate reductase OS=Moorella thermoac... [more]
DAPB_DICT64.325e-1230.93Dihydrodipicolinate reductase OS=Dictyoglomus ther... [more]

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Properties
Property NameValue
Genbank descriptionC31703A10EF StrClemenN Citrus clementina cDNA clone C31703A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923279 ID=FC923279; Name=FC923279; organism=Citrus clementina; type=EST; length=597bp
GAAAGCAGAGGGATGGAGGTTGCTGGCGCCATCGATTCCCATTCTGTAGG
AGAAGATATTGGAATGGTGTGTGATATGGAGCAGCCTCTGGAAATTCCTG
TAATGAGTGACCTCACAATGGTATTAGGTTCCATATCTCAGTCAAAAGCA
AGAGCAGTCGTCATTGATTTCACAGATGCTTCAACAGTTTATGACAATGT
GAAACAGGCAACAGCATTTGGAATGAGAAGCGTGGTTTACGTGCCACACA
TTCAGCTGGAGACAGTTTCAGCATTATCTGCATTCTGTGACAAGGCCAGC
ATGGGATGTCTTATTGCACCAACTCTCTCAATAGGATCTATTCTTCTCCA
GCAAGCCGCCATTTCTGCCTCCTTCCACTACAAGAATGTGGAAATTGTAG
AATCAAGGCCAAATGCAAGAGATTTTCCATCACCAGATGCAACTCAAATC
GCCAACAACCTCTCCAACCTTGGTCAGATCTACAACAGAGAAGATATTTC
AACAGACGTGAAAGCAAGGGGTCAAGTCCTGGGAGAAGATGGAGTTCGTG
TGCACAGTATGGTCCTTCCAAGGCTTCCATCTAGTACAACGGTTTAC
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