FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLK 601
            M RGK ++R+IEN T+RQVTFSKRRNG++KKA EL+VLCDA+V++++ S   KL  + S   S+++  + Y K
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQK 73          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   +L ++AS+ M   + +Y ++++
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYSE 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 35/74 (47.30%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD ++A+IIF+   +L ++ASS M   + +Y ++++
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYTEYSE 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  395 RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLK 661
            R K +M +++N ++ QVTFSKRR+GL KKA EL  LC AEVA+++FSP  K+  F   ++   I+R++ +     N   P + N   L+
Sbjct:    8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINN-----NPLPPHQHNNMQLR 91          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 2
Query:  395 RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQ 631
            R K  M +I+  + RQVTFSKRR GL KKA EL  LC AE+ +I+FSP  K   F   S++  ++RY+     +  ++Q
Sbjct:   64 RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQ 142          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MEF2A_HUMAN2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
CMB2_DIACA3.679e-1352.05MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MEF2B_HUMAN6.276e-1347.30Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE1.071e-1247.30Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AGL62_ARATH6.939e-1240.45Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AGL61_ARATH7.672e-1143.04Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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