FC923282
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21 Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPT-EQNMQHLKH 664 M R + +++RIE+A +RQVTFSKRR GL KKA ELSVLCDA+VA+I+FS GKLS FASSSM E I++Y H+ + QP+ + N++H K+ Sbjct: 1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKY 93
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21 Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643 M RGK +++RIEN SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+IIFS RG+L EF+SSS M +T+ERY ++++ A P + Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE 86
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21 Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643 M RGK +++RIEN SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+IIFS RG+L EF+SSS M +T+ERY ++++ A P + Sbjct: 1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE 86
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21 Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQNMQH 655 M RG Q+RRIEN +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S SSM+ +ERY +++ D R +P ++ ++ Sbjct: 1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQEN 90
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21 Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQNMQH 655 M RG Q+RRIEN +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S SSM+ +ERY +++ D R +P ++ ++ Sbjct: 1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQEN 90
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21 Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY---LKHTKDTRNKAQPTE 640 M RG+ +++RIEN +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+ + +T+ERY + +D+ N T+ Sbjct: 1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQ 87
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21 Identity = 51/86 (59.30%), Postives = 70/86 (81.40%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643 M RG+ +++RIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+I+FS RGKL EF S+S M +T+ERY + + + +QP+++ Sbjct: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKE 86
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21 Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPT 637 M R K Q+R+I+NAT+RQVTFSKRR GL KKA ELSVLCDA+VA+IIFS GKL EF SSSM+E +ER+ +K+ QP+ Sbjct: 1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPS 83
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21 Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERYLKHTKDTRNKAQ 631 M RGK +++RIEN +RQVTF+KRRNGLLKKA+ELSVLCDAE+A++IFS RGKL EF S S M T+++Y KH+ T + Q Sbjct: 1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQ 83
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21 Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQN 646 M RGK +++RIEN TSRQVTF KRRNGLLKKA+EL++LCDAE+A+I+FS RG+L EF++ +S + TIERY K + T A + N Sbjct: 1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVN 87 The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bpback to top |