FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPT-EQNMQHLKH 664
            M R + +++RIE+A +RQVTFSKRR GL KKA ELSVLCDA+VA+I+FS  GKLS FASSSM E I++Y  H+ +     QP+ + N++H K+
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSKY 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643
            M RGK +++RIEN  SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+IIFS RG+L EF+SSS M +T+ERY     ++++ A P  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE 86          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643
            M RGK +++RIEN  SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+IIFS RG+L EF+SSS M +T+ERY     ++++ A P  +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENE 86          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQNMQH 655
            M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S SSM+  +ERY +++ D R   +P  ++ ++
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQEN 90          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.152e-21
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQNMQH 655
            M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S SSM+  +ERY +++ D R   +P  ++ ++
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQEN 90          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY---LKHTKDTRNKAQPTE 640
            M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+ + +T+ERY     + +D+ N    T+
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQ 87          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 51/86 (59.30%), Postives = 70/86 (81.40%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQ 643
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+I+FS RGKL EF S+S M +T+ERY + +  +   +QP+++
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKE 86          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPT 637
            M R K Q+R+I+NAT+RQVTFSKRR GL KKA ELSVLCDA+VA+IIFS  GKL EF SSSM+E +ER+   +K+     QP+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPS 83          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERYLKHTKDTRNKAQ 631
            M RGK +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAE+A++IFS RGKL EF S  S M  T+++Y KH+  T +  Q
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQ 83          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQN 646
            M RGK +++RIEN TSRQVTF KRRNGLLKKA+EL++LCDAE+A+I+FS RG+L EF++ +S + TIERY K +  T   A   + N
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVN 87          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD22_ORYSJ1.648e-2155.91MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MADS1_ORYSJ2.152e-2161.63MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI2.152e-2161.63MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD18_ORYSJ2.152e-2157.78MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.152e-2157.78MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MADS6_ORYSJ2.811e-2159.77MADS-box transcription factor 6 OS=Oryza sativa su... [more]
CMB1_DIACA2.811e-2159.30MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
SVP_ARATH6.262e-2162.65MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]
AGL3_ARATH6.262e-2161.45Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD21_ORYSJ8.178e-2158.62MADS-box transcription factor 21 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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