FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHT 607
            M RGK Q++RIEN  +RQVTFSKRRNGLLKKA E+SVLCDAEVA I+FSP+GKL E+A+ S M + +ERY +++
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYS 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+ SM +T+E+Y K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+ SM +T+E+Y K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF--ASSSMQETIERYLKHTKDTRNKAQPTEQNMQHL 658
            M RGK +++RIEN T+RQVTFSKRR GLLKKA ELSVLCDAE+ +IIFS  GKL E+  ASSSM++ IERY K      + A+ TE + QHL
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQK-----VSGARITEYDNQHL 87          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-ASSSMQETIERYLK 601
            M RG+ +++RIE   +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF +SSSM +T+ERY K
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 49/72 (68.06%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV++I+FS RGKL EF S S+M +T+ERY K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 613
            M R + ++RRIE+A +RQVTFSKRR GL KKA EL+VLCDA+VA+++FS  GKLS+FASS+M E I++Y  H+K+
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKN 75          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 47/86 (54.65%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  395 RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQ 652
            R +  +RRI+N  +RQVTFSKRR GL KKA ELS+LCDAEV +++FS  GKL +FAS+SM++ I+RY  H+K T  +A+P++ ++Q
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSK-TLQRAEPSQLDLQ 106          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFA-SSSMQETIERYLK-HTKDTRNKAQPTEQNMQ 652
            M RG+ +++RIEN TSRQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E++ +++++ TI+RY K H   + + A   E N Q
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQ 90          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPT 637
            M R K Q+++I+N+T+RQVTFSKRR GL KKA ELSVLCDA+VA+IIFS  GKL +++SSSM++ +ER   H+K+     QP+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPS 83          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD15_ORYSJ3.108e-2066.22MADS-box transcription factor 15 OS=Oryza sativa s... [more]
MADS7_ORYSJ4.059e-2069.44MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.059e-2069.44MADS-box transcription factor 7 OS=Oryza sativa su... [more]
GGM13_GNEGN4.059e-2061.96MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL9_SOLLC4.059e-2070.83Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH6.923e-2068.06Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MAD55_ORYSJ6.923e-2061.33MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD47_ORYSJ9.042e-2054.65MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD13_ORYSJ1.181e-1957.78MADS-box transcription factor 13 OS=Oryza sativa s... [more]
JOIN_SOLLC1.542e-1957.83MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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