FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 46/69 (66.67%), Postives = 59/69 (85.51%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 595
            M RGK  +RRI+N+TSRQVTFSKRRNGLLKKA ELS+LCDAEV +++FS  G+L EF+S++M+  I+RY
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRY 69          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 47/85 (55.29%), Postives = 64/85 (75.29%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQ 643
            M RGK  +RRI+N+TSRQVTFSKRRNG+ KKA EL++LCDAEV ++IFS  G+L E++S+SM+  I+RY K   + +  A P  +
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGKSKDEQQAVANPNSE 85          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD 613
            M RGK +++RI+NATSRQVTFSKRR+GL KKA ELS+LCDAEV +++FS   +L +FASSSM+  IERY +  +D
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKED 75          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 50/96 (52.08%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLKH---TKDTRNKAQPTEQNMQHLK 661
            M RGK +++RIEN TSRQVTFSKRR+GL+KK  ELSVLCDA++ +I+FS +GKL+E+ +   SM++ I+RY+K      +  N+A P   N Q +K
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIK 96          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQ 643
            M RGK  ++RI+++TSRQVTFSKRR GL+KKA EL++LCDAEV +IIFS  GKL +FASSSM+  I+RY K   + +    P  +
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPASE 85          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK-----HTKDTRNKAQPTEQNMQHLK 661
            M RGK +++RIEN  +RQVTFSKR++GLLKKA+ELSVLCDAEV++IIFS  GKL EF++  +  TIERY +        DT    Q   Q +  LK
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNLLDNDTLEDTQGLRQEVTKLK 96          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQNMQHLK 661
            M RGK Q++RIEN   RQVTF KRR GLLKKA ELSVLCDAE+ V+IFSP+GKL E A+  +M+  I++Y+K T   R  +  T    + L+
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQ 92          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 2
Query:  383 IKMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            I M RGK +++RIEN TSRQVTFSKRR GLLKK  ELSVLCDA++ +IIFS +GKL E+ S   SM + I RYL+    T   + P E N   L  E
Sbjct:    2 IIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQ----TTGASLPVEDNRVQLYDE 94          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHT 607
            M RGK Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVA+IIFS +GKL E+A+ S M + +ERY +++
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYS 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT------------KDTRNKAQPTEQNMQ----HLKHE 667
            M RGK +++RIEN+++RQVT+SKRRNG+LKKA E+SVLCDA V+VIIF+  GK+ EF+S+S+ + +++Y K T             +  NK +    NMQ    HLK E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGE 109          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD57_ORYSJ2.014e-1966.67MADS-box transcription factor 57 OS=Oryza sativa s... [more]
MAD27_ORYSJ2.014e-1955.29MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD23_ORYSJ2.631e-1962.67MADS-box transcription factor 23 OS=Oryza sativa s... [more]
DEF21_ANTMA4.487e-1952.08MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL21_ARATH4.487e-1956.47Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
AGL13_ARATH4.487e-1954.17Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL12_ARATH4.487e-1954.35Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
FBP24_PETHY7.654e-1955.67MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD14_ORYSJ9.997e-1964.86MADS-box transcription factor 14 OS=Oryza sativa s... [more]
GLOB_TOBAC1.705e-1847.71Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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