FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT------------KDTRNKAQPTEQNMQ----HLKHE 667
            M RGK +++RIEN+++RQVT+SKRRNG+LKKA E+SVLCDA V+VIIF+  GK+ EF+S+S+ + +++Y K T             +  NK +    NMQ    HLK E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS-SMQETIERY 595
            MVRGK QMRRIEN   RQVTF KRR GLLKKA ELSVLCDA+V VIIFS +GKL E A++ +M   +ERY
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERY 70          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 47/74 (63.51%), Postives = 62/74 (83.78%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHT 607
            M RGK Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVA+IIFS +GKL ++A+ S M + +ERY +++
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYS 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTR-----NKAQPTEQNMQHLK 661
            M RG+ Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEV +I+FS +GKL E+A+ S M+  +ERY +++   R     +   P    ++H K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAK 97          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI----ERYLKHTKDT--RNKAQPTEQNMQHLK 661
            M RG+ Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVA+I+FS +GKL E+++ S  E I    +RYL   K    R+ +Q     ++H K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAK 97          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETI----ERYLKHTKDT--RNKAQPTEQNMQHLK 661
            M RG+ Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVA++IFS +GKL E+++ S  E I    +RYL   K    R+ +Q     ++H K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAK 97          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQP 634
            M RG+ Q++RIEN  +RQVTFSKRR GLLKKA E+SVLCDAEVA+++FS +GKL E+++ S M++ +ERY +++   R    P
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAP 83          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQP 634
            M RG+ Q++RIEN  +RQVTFSKRR GLLKKA E+SVLCDAEVA+++FS +GKL E+++ S M++ +ERY +++   R    P
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAP 83          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHT 607
            M RG+ Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEV +I+FS +GKL E+A+ S M+  +ERY +++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYS 74          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHT 607
            M RG+ Q++RIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEV +I+FS +GKL E+A+ S M+  +ERY +++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYS 74          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
FBP1_PETHY1.705e-1847.71Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD33_ORYSJ2.227e-1870.00MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD14_ORYSI2.227e-1863.51MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL8_SOLTU2.227e-1850.52Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH2.227e-1852.58Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL2.909e-1852.58Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AP1_SINAL3.799e-1855.42Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH3.799e-1855.42Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC3.799e-1860.81Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLCO3.799e-1860.81Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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