FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL3_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.350e-84
Identity = 143/229 (62.45%), Postives = 186/229 (81.22%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+ +SRAS+YGL+K D SG+++QF+E+PKG DL+ M+ DT+ L  ++ D  K+PYIASMGVY+F+ DVLLNLL+S Y   +DFGSEI+P ++ DHNVQA++F DYWEDIGTI+SFFDAN AL EQP KFEFYDP+TPF+TS R+LPPTK D+C+I +AII HGCFLREC ++H+     SRL SG E ++ MMMGAD Y+TE E++ L++E KVPIG G+N
Sbjct:  218 ADITLSCAPVGESRASEYGLVKFDSSGRVVQFSEQPKGDDLEAMKVDTSFLNFAIDDPAKYPYIASMGVYVFKRDVLLNLLKSRYAELHDFGSEILPRALHDHNVQAYVFTDYWEDIGTIRSFFDANRALCEQPPKFEFYDPKTPFFTSPRYLPPTKSDKCRIKEAIILHGCFLRECKIEHTAF---SRLNSGSELKNAMMMGADSYETEDEMSRLMSEGKVPIGVGEN 443          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.387e-82
Identity = 146/230 (63.48%), Postives = 186/230 (80.87%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG-VYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+S +P+DDSRASD+GLMKID +G+++ F+EKPKG DLK M  DTT+LGLS  +A + PYIAS+G VY+F+ D+LLNLLR  +P +NDFGSEIIPAS K+  V+A+LFNDYWEDIGTI+SFF ANLALTE P +F FYD   P YTS R LPP+ +D  KIVD+I+SHG FL  C V+HS+VG+RSR+ + V  +DT+M+GADYY+T++EI S LAE KVP+G G+N
Sbjct:  197 ADITISSLPIDDSRASDFGLMKIDDTGRVMSFSEKPKGDDLKAMAVDTTVLGLSPEEAKEKPYIASIGKVYVFKKDILLNLLRWRFPTANDFGSEIIPASTKEFCVKAYLFNDYWEDIGTIRSFFRANLALTEHPPRFSFYDATKPIYTSRRNLPPSAIDNSKIVDSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEGKVPLGIGEN 426          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.944e-82
Identity = 137/229 (59.83%), Postives = 184/229 (80.35%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADIT+SC P+D+SRAS  GL+KID +G+++QF EKPKG DL  M+ +T  L  ++ DA K+PY+ASMG+Y+F+ D LL+LL+S Y   +DFGSEI+P +V DH+VQA +F  YWED+GTIKSFFDANLALTEQP+KF+FYDP+TPF+T+ R LPPT++D+CK+  A IS GC LREC+++HS++GV SR+ SG E +D++MMGAD Y+TE E + LL   KVP+G G+N
Sbjct:  231 ADITISCAPVDESRASKNGLVKIDHTGRVLQFFEKPKGADLNSMRVETNFLSYAIDDAQKYPYLASMGIYVFKKDALLDLLKSKYTQLHDFGSEILPRAVLDHSVQACIFTGYWEDVGTIKSFFDANLALTEQPSKFDFYDPKTPFFTAPRCLPPTQLDKCKMKYAFISDGCLLRECNIEHSVIGVCSRVSSGCELKDSVMMGADTYETEEEASKLLLAGKVPVGIGRN 459          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.150e-77
Identity = 137/229 (59.83%), Postives = 177/229 (77.29%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            A I++ C+P+D SRASD+GLMKID +G++I F+EKP+G DLK M+           +A K PYIASMGVY+F+ ++LLNLLR  +P +NDFGSEIIPA+ ++ NV+A+LFNDYWEDIGTIKSFF+ANLAL EQP+KF FYD   P YTS R LPP+ +   KI D+IISHGCFL +C V+HS+VG+RSR+ S V  +DT+M+GAD+Y+T+ E    LAE KVPIG G+N
Sbjct:   27 AGISICCLPIDGSRASDFGLMKIDDTGRVISFSEKPRGADLKEME-----------EAEKKPYIASMGVYIFKKEILLNLLRWRFPTANDFGSEIIPAAAREINVKAYLFNDYWEDIGTIKSFFEANLALAEQPSKFSFYDASKPMYTSRRNLPPSMISGSKITDSIISHGCFLDKCRVEHSVVGIRSRIGSNVHLKDTVMLGADFYETDMERGDQLAEGKVPIGIGEN 244          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.895e-71
Identity = 130/228 (57.02%), Postives = 171/228 (75.00%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAK-FEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+D+ RASD+GLMKID SG+II F+EKPKG  L  MQ DT++LGL+   A K PYIASMG+Y+F+ +VL  LLR S   + DFG EIIP + KD+NVQA+LF+DYWEDIGTI++F+ ANLALT+QP   F FYD   P YT AR+LPPTK+  C+I ++II  GC L+ C +QHS++GVRSR+ESG   +++++MGAD+YQ   E    L E  +P+G G
Sbjct:  144 ADITLSVIPIDERRASDFGLMKIDDSGRIIDFSEKPKGEALTQMQVDTSVLGLTKEQAQKQPYIASMGIYVFKKEVLFKLLRESVERT-DFGKEIIPDASKDYNVQAYLFDDYWEDIGTIEAFYHANLALTQQPQPPFSFYDEHAPIYTRARYLPPTKLLDCQITESIIGEGCILKNCRIQHSVLGVRSRIESGCVIEESLLMGADFYQASVERQCSLIENDIPVGIG 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.223e-71
Identity = 126/228 (55.26%), Postives = 170/228 (74.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQP-AKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+DD RASD+GLMKID SG++I F+EKPKG  L  M+ DTT+LGL+   A   PYIASMG+Y+F+ DVL+ LL+ S     DFG EIIP + KDHNVQA+LF+DYWEDIGTI++F++ANLALT+QP   F FYD   P YT AR+LPPTK+  C + ++II  GC L+ C +QHS++GVRSR+E+G   +++++MGAD+YQ   E    + +  +P+G G
Sbjct:  144 ADITLSVIPIDDRRASDFGLMKIDNSGRVIDFSEKPKGEALTKMRVDTTVLGLTPEQAASQPYIASMGIYVFKKDVLIKLLKESLE-RTDFGKEIIPDASKDHNVQAYLFDDYWEDIGTIEAFYNANLALTQQPMPPFSFYDEEAPIYTRARYLPPTKLLDCHVTESIIGEGCILKNCRIQHSVLGVRSRIETGCVIEESLLMGADFYQASVERQCSIDKGDIPVGIG 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.515e-71
Identity = 125/228 (54.82%), Postives = 170/228 (74.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQP-AKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+DD RASD+GLMKID SG++I F+EKPKG  L  M+ DTT+LGL+   A   PYIASMG+Y+F+ DVL+ LL+ +     DFG EIIP + KDHNVQA+LF+DYWEDIGTI++F++ANLALT+QP   F FYD   P YT AR+LPPTK+  C + ++II  GC L+ C +QHS++GVRSR+E+G   +++++MGAD+YQ   E    + +  +P+G G
Sbjct:  144 ADITLSVIPIDDRRASDFGLMKIDNSGRVIDFSEKPKGEALTKMRVDTTVLGLTPEQAASQPYIASMGIYVFKKDVLIKLLKEALE-RTDFGKEIIPDAAKDHNVQAYLFDDYWEDIGTIEAFYNANLALTQQPMPPFSFYDEEAPIYTRARYLPPTKLLDCHVTESIIGEGCILKNCRIQHSVLGVRSRIETGCMIEESLLMGADFYQASVERQCSIDKGDIPVGIG 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.407e-71
Identity = 125/228 (54.82%), Postives = 173/228 (75.88%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+D+ RASD+GLMK+D SG++++F+EKPKG +L+ MQ DTT+LGL    A   P+IASMG+Y+F+ DVL++LL S +P   DFG E+IPA+   +N QAFLFNDYWEDIGTI SF++ANLALT+QP+  F FYD + P YT AR+LPPTK+  C++  +II  GC L++C+VQ+S++G+RSR+E+    QD ++MGAD+Y+T        A  KVP+G G
Sbjct:  145 ADITLSVLPIDEKRASDFGLMKLDGSGRVVEFSEKPKGDELRAMQVDTTILGLDPVAAAAQPFIASMGIYVFKRDVLIDLL-SHHPEQTDFGKEVIPAAATRYNTQAFLFNDYWEDIGTIASFYEANLALTQQPSPPFSFYDEQAPIYTRARYLPPTKLLDCQVTQSIIGEGCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIG 371          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.407e-71
Identity = 125/228 (54.82%), Postives = 173/228 (75.88%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+D+ RASD+GLMK+D SG++++F+EKPKG +L+ MQ DTT+LGL    A   P+IASMG+Y+F+ DVL++LL S +P   DFG E+IPA+   +N QAFLFNDYWEDIGTI SF++ANLALT+QP+  F FYD + P YT AR+LPPTK+  C++  +II  GC L++C+VQ+S++G+RSR+E+    QD ++MGAD+Y+T        A  KVP+G G
Sbjct:  145 ADITLSVLPIDEKRASDFGLMKLDGSGRVVEFSEKPKGDELRAMQVDTTILGLDPVAAAAQPFIASMGIYVFKRDVLIDLL-SHHPEQTDFGKEVIPAAATRYNTQAFLFNDYWEDIGTIASFYEANLALTQQPSPPFSFYDEQAPIYTRARYLPPTKLLDCQVTQSIIGEGCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIG 371          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP8 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glgC PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.805e-69
Identity = 122/229 (53.28%), Postives = 170/229 (74.24%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            ADIT+S VP+D+ RAS +GLMKID  G+++ F+EKPKG +LK MQ DTT+LGL+   A + PYIASMG+Y+F+ +VL  LL  + P   DFG EIIP S KD+N+QA+LF  YWEDIGTIK+F++ANLAL  QP+ +F FY+   P YT +R+LPPTK   C I ++++S GC L++C + +SI+G+R+R+E+    +DTM+MGADYY++ S   S   E K+P+G G+
Sbjct:  144 ADITLSVVPIDEERASSFGLMKIDDHGRVVDFSEKPKGDELKQMQVDTTVLGLTPEQAKESPYIASMGIYVFKKEVLAQLLEEN-PDQTDFGKEIIPFSAKDYNLQAYLFKGYWEDIGTIKAFYEANLALNRQPSPRFSFYNEEYPIYTRSRYLPPTKALNCTITESMVSEGCILKDCRIHNSILGIRTRIEANCTIEDTMLMGADYYESPSLRESKAQEGKIPMGIGE 371          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGL3_WHEAT4.350e-8462.45Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_SOLTU2.387e-8263.48Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_MAIZE6.944e-8259.83Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_WHEAT5.150e-7759.83Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_NOSP71.895e-7157.02Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]
GLGC_ANAVT4.223e-7155.26Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP5.515e-7154.82Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_SYNP69.407e-7154.82Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE79.407e-7154.82Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP88.805e-6953.28Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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