FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV C+P+    A+ +G+M +D S +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVVCMPVPIKEATAFGVMAVDESDKIIDFVEKPANPP-------------AMPGDASKS--LASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOS5 (Glucose-1-phosphate adenylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 66/247 (26.72%), Postives = 115/247 (46.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+T+ C+ +    A+ +G+M +D S +I  F EKP  P   G+  D            +   +ASMG+Y+F    L +LL         S+DFG ++IPA V++    A  F+D           YW D+GTI +F+ AN+ LT+   K + YD   P +T ++ +PP K        R   + +++S  C +    ++ S++    R  S       + +       ++++ + + +R V I  G
Sbjct:  154 ADVTIGCLTVPRMEATAFGVMHVDASLRITDFLEKPADPP--GIPGD------------EGNALASMGIYVFDWAFLRDLLIRDAEDPNSSHDFGHDLIPAIVRNGKAMAHRFSDSCVMTGLETEPYWRDVGTIDAFWQANIDLTDFTPKLDLYDREWPIWTYSQIVPPAKFIHDSERRRGMAISSLVSGDCIVSGSEIRSSLLFTGCRTHSYSSLSHVVALPHVTVNRKADLTNCVLDRGVVIPEG 386          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHISN (Glucose-1-phosphate adenylyltransferase OS=Rhizobium sp. (strain NGR234) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 66/224 (29.46%), Postives = 104/224 (46.43%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGVEFQD 605
            AD+T+ C+ +    A+ +G+M +D   +II F EKP  P               +P   +   +ASMG+Y+F T  L+++LR   +    S DFG +IIP  V+     A  F             YW D+GTI +++ AN+ LT    + + YD   P +T +   PP K        R     +++S  C +   ++  S++  GVR    SRLE+ V   D
Sbjct:  154 ADVTIGCLEVPRMEATGFGVMHVDNEDRIIAFVEKPADPP-------------GIPGNPEMA-LASMGIYVFHTKFLMDMLRRDAADPKSSRDFGKDIIPYIVEHGKAVAHRFTHSCVRSDFEREAYWRDVGTIDAYWQANIDLTHITPELDIYDSTWPIWTFSEIKPPAKFVHDDEDRRGSATSSLVSGDCIISGAALNKSLLFTGVRVNSYSRLENAVVLPD 363          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBPA (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio parahaemolyticus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 68/242 (28.10%), Postives = 111/242 (45.87%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLF---------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPI 683
            A +TV+C+ +    AS +G+M I  +G +  F EKP+ P              ++PD      +ASMG+Y+F  DVL   L     L   S+DFG++IIP  +   +V A+ F         + YW D+GTI SF++AN+ L E       Y       T     PP +       +    +++II+ G      SVQHSI+    R++      D+++         S++ + + ++ V I
Sbjct:  144 AKLTVACMDVPVKDASAFGVMGIAENGLVKSFVEKPENPP-------------TLPDD-NAKSLASMGIYIFDMDVLKEALTEDAKLETSSHDFGNDIIPKLIDTESVYAYKFCGSKGRVDKDCYWRDVGTIDSFYEANMDLLEPVPPMNLYQSNWAIRTYEPQFPPARTVSSATGNEGIFINSIIATGVINSGGSVQHSIISSNVRIQDSATVVDSIIFDDVEVGEGSQLVNCIVDKHVRI 371          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_NOCFA (Glucose-1-phosphate adenylyltransferase OS=Nocardia farcinica GN=glgC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 67/244 (27.46%), Postives = 113/244 (46.31%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIV-DAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            A +TV+ + +  S AS +G +  D SG+I QF EKP  P                PD     + ASMG Y+F T VL++ +R+    S+   D G +IIPA V+      + F D            YW D+GTI +F+DA++ L      F  Y+   P   +A  LPP K  +  +  + I+  G  L   +V++S++     ++ G   + +++M        + +   + ++ V +G G+
Sbjct:  146 AGVTVAGIRVPRSEASAFGCIDSDESGRITQFLEKPAHPP-------------GTPDDPNMTF-ASMGNYVFTTKVLVDSIRADAENSDSDHDMGGDIIPALVEAGEAGVYDFADNQVPGATDRDHGYWRDVGTIDAFYDAHMDLVSVHPVFNLYNKHWPIRGAAENLPPAKFAQGGLAQECIVGSGSILSAATVRNSVLSSNVVVDDGATVEGSVLMPGVRIGRGAVVRRAILDKNVVVGEGE 375          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_HAES2 (Glucose-1-phosphate adenylyltransferase OS=Haemophilus somnus (strain 2336) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 61/217 (28.11%), Postives = 111/217 (51.15%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQHSIV--GVRSRLESGVEF 599
            A  TV C+ +   +AS++G+M +D + ++  F EKPK P     + DT+L              ASMG+Y+F  D L ++L    ++   S+DFG +I+P S+++  + A  F+            YW D+GT+ SF+ +N+ L  +  + + YD R P   +     P+K      D   + +++IS GC + +  + +S++   V+ + +S VE+
Sbjct:  160 AKCTVGCIEVPREQASEFGVMAVDENLKVKAFVEKPKDPPAIPNKPDTSL--------------ASMGIYVFDADYLYDVLMREVNTPYTSHDFGKDILPKSLEEEVLYAHPFSRSCMGRNTDGEIYWRDVGTLDSFWQSNIDLVSEHPQLDIYDQRWPIRGNPTQTYPSKFFYNKQDIKPVDNSLISGGCVITDAEISYSVLFDQVKVKADSKVEY 362          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_HAES1 (Glucose-1-phosphate adenylyltransferase OS=Haemophilus somnus (strain 129Pt) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 61/217 (28.11%), Postives = 111/217 (51.15%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQHSIV--GVRSRLESGVEF 599
            A  TV C+ +   +AS++G+M +D + ++  F EKPK P     + DT+L              ASMG+Y+F  D L ++L    ++   S+DFG +I+P S+++  + A  F+            YW D+GT+ SF+ +N+ L  +  + + YD R P   +     P+K      D   + +++IS GC + +  + +S++   V+ + +S VE+
Sbjct:  160 AKCTVGCIEVPREQASEFGVMAVDENLKVKAFVEKPKDPPAIPNKPDTSL--------------ASMGIYVFDADYLYDVLMREVNTPYTSHDFGKDILPKSLEEEVLYAHPFSRSCMGRNTDGEIYWRDVGTLDSFWQSNIDLVSEHPQLDIYDQRWPIRGNPTQTYPSKFFYNKQDIKPVDNSLISGGCVITDAEISYSVLFDQVKVKADSKVEY 362          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THEMA (Glucose-1-phosphate adenylyltransferase OS=Thermotoga maritima GN=glgC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/232 (26.29%), Postives = 115/232 (49.57%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH--NVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            +AD T++C+ +    AS +G+M  D  G+I+ F EKP  P                        +AS+G+Y+F  + L  +L    +    S+DFG ++IP  ++++  ++ AF F+ YW D+GT++S+++ANL L      F  YDP   F+T    +PP  V    K+  +++S G  +   +V +S++    ++  G   +++++M          + +++    V IG
Sbjct:  144 EADGTIACMEVPIEEASRFGIMITDVDGRIVDFEEKPAKPRSN---------------------LASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFTHTEEMPPAYVAPGSKVSTSLVSEGAEVYG-NVFNSVIFQGVKIGRGTVVKNSVIMTRTEIGENCYLENVIIAENVKIG 353          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_DEIDV (Glucose-1-phosphate adenylyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 66/249 (26.51%), Postives = 118/249 (47.39%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND---FGSEIIPASVKD-HNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            +AD+T++  PM  S+A  +G+M++D   ++ +F EK   PD  G+  +  L             + SMG Y+F    L  LL +S     D   FG  +IP ++ D ++VQA+ F           N YW D+GTI ++++AN+ L     +F+ Y+P  P  TS+ F PP K        + +  +++++ G  +   +V+ S++G   R  S    +  ++         S +   + ++ V I  G
Sbjct:  148 RADVTIAAYPMPRSQAHQFGVMQVDAGWRVTEFLEKV--PDPPGLPENPDLS------------LTSMGNYIFSRRALEELLHTSISGQEDGFDFGHNVIPRALADGYHVQAYDFHRNPIPGQSNPNLYWRDVGTIDAYYEANMDLISINPEFDIYNPSWPLRTSSEFSPPAKFVHESDGRKGQAFNSVMAGGVIISGATVRDSVLGRNIRAHSYALIESCVLFDDVEVGRHSHLNRAIVDKNVKIPPG 382          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ANADF (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.091e-18
Identity = 61/224 (27.23%), Postives = 104/224 (46.43%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLF------------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCK--------IVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMM 614
            AD+TV+ +P+    AS++G++++D  G++I F EKPK   +K M  D T              +ASMG YLF TD L+  +         ++DFG  I+ A  +   V  + F              YW D+G++ +++ AN+ L +    F  Y+ R P +T+    PP K               D+++S GC +      H I+  + R+ S    +D+++
Sbjct:  143 ADLTVAAIPVPVEEASEFGIIEVDGDGRMIGFVEKPKA-GVKTMPGDPTRA------------LASMGNYLFTTDALVQEIVRDAGDTKSAHDFGKSIVAAMYERKRVFVYDFAKNVVPGQGDKERGYWRDVGSLDAYYQANMDLVDVDPSFSLYNDRWPIFTAQHNFPPVKFVFNNQTEGRVGYATDSLVSEGCIISGGHAHHCILSPKVRINSYSLVEDSIL 353          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_SALDC6.398e-1930.49Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_RHOS56.398e-1926.72Glucose-1-phosphate adenylyltransferase OS=Rhodoba... [more]
GLGC_RHISN6.398e-1929.46Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC2_VIBPA6.398e-1928.10Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_NOCFA8.357e-1927.46Glucose-1-phosphate adenylyltransferase OS=Nocardi... [more]
GLGC_HAES28.357e-1928.11Glucose-1-phosphate adenylyltransferase OS=Haemoph... [more]
GLGC_HAES18.357e-1928.11Glucose-1-phosphate adenylyltransferase OS=Haemoph... [more]
GLGC_THEMA1.091e-1826.29Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_DEIDV1.091e-1826.51Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_ANADF1.091e-1827.23Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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