FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.346e-68
Identity = 122/229 (53.28%), Postives = 170/229 (74.24%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAK-FEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            KADIT+S VP+D+ RAS +GLMKID + +++ F+EKPKG  L+ MQ DT++LGLS   A K PYIASMG+Y+F  +VL  LLR + P   DFG EIIP +  D+N+QA+L+  YWEDIGTI++F+++NLALT+QP   F FYD + P YT  R+LPPTKV  C I +++IS GC L++C + HS++G+RSR+ES    +D+M+MGADYY++ ++  ++L   KVP G G
Sbjct:  143 KADITLSVVPIDEKRASSFGLMKIDDNARVVDFSEKPKGEALRQMQVDTSILGLSPDQARKNPYIASMGIYIFNREVLGKLLRQN-PEQTDFGKEIIPGAKTDYNLQAYLYKGYWEDIGTIEAFYESNLALTQQPQPPFSFYDEKAPIYTRPRYLPPTKVLNCTITESMISEGCILKDCRIHHSVLGIRSRVESDCTIEDSMLMGADYYESSTKRKAVLEAGKVPQGIG 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.699e-67
Identity = 119/229 (51.97%), Postives = 171/229 (74.67%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            ADIT+S VP+D+ RAS +GLMKID +G+I+ F+EKPKG +LK MQ DT++LGL+   A + PYIASMG+Y+F    L +LL+++ P   DFG EIIP + KD+N+QA+LF  YWEDIGTI++F++ANLAL  QP   F FY+ + P YT AR LPPTKV  C I +++IS GC +++C + +S++G+RSR+E+    +D+++MGADYY++     SLL + K+P+G G+
Sbjct:  144 ADITLSVVPIDEKRASSFGLMKIDDNGRIVDFSEKPKGEELKQMQVDTSILGLNPEQAKESPYIASMGIYVFNKKALNDLLKNN-PEQTDFGKEIIPGAAKDYNLQAYLFKGYWEDIGTIEAFYEANLALNRQPRPSFSFYNEKAPIYTRARNLPPTKVLNCNITESMISEGCMIKDCRIHNSVLGIRSRIETDCVVEDSLLMGADYYESLETRQSLLDQGKIPVGIGK 371          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.090e-66
Identity = 117/229 (51.09%), Postives = 166/229 (72.49%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP +      VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD  +P YT  R+LPP+K+    I D++I  GC ++ C + HS++G+RS +  G   +DT++MGADYY+T+++   L A+  VPIG G
Sbjct:  214 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASMGIYVISKDVMLNLLREQFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG 442          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.342e-66
Identity = 118/231 (51.08%), Postives = 168/231 (72.73%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   +V+L+LLR  +P +NDFGSE+IP +      VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD  +P YT  R+LPP+K+    I D++I  GC ++ C + HS+VG+RS +  G   +DT++MGADYY+TE++   L A+  VPIG G+N
Sbjct:  221 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASMGIYVISKNVMLDLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIFHSVVGLRSCISEGAIIEDTLLMGADYYETEADKRFLAAKGSVPIGIGKN 451          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.977e-66
Identity = 117/231 (50.65%), Postives = 168/231 (72.73%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R+LPP+K+    + D++I  GC ++ C + HS+VG+RS +  G   +D+++MGADYY+T++E   L A+  VPIG G+N
Sbjct:  234 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDAERKLLAAKGSVPIGIGKN 464          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 9.112e-66
Identity = 118/231 (51.08%), Postives = 169/231 (73.16%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   DV+L+LLR+ +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R+LPP+K+    + D++I  GC ++ C + HS+VG+RS +  G   +D+++MGADYY+T +E + L A+  VPIG G+N
Sbjct:  233 ADITVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETATEKSLLSAKGSVPIGIGKN 463          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.554e-65
Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R+LPP+K+    + D++I  GC ++ C + HS+VG+RS +  G   +D+++MGADYY+T+++   L A+  VPIG G+N
Sbjct:  234 ADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKN 464          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.462e-65
Identity = 116/231 (50.22%), Postives = 168/231 (72.73%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD++RA+ +GLMKID  G+II+F+E PKG  LK M+ DTT+LGL    A + PYIASMG+Y+    V+L+LLR  +P +NDFGSE+IP + +    VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD  +P YT  R+LPP+K+    I D++I  GC ++ C + HS+VG+RS +  G   +DT++MGADYY+T+++   L A+  VPIG G+N
Sbjct:  225 ADITVAALPMDEARATAFGLMKIDEEGRIIEFSENPKGEQLKAMKVDTTILGLDDDRAKEMPYIASMGIYVVSKHVMLDLLRDKFPGANDFGSEVIPGATELGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPPSKMLDADITDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGGVPIGIGKN 455          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.462e-65
Identity = 116/228 (50.88%), Postives = 162/228 (71.05%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAK-FEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S +P+++  AS +GL+++D SG++  F+EKP+G  L  M+ DTT  GL+  +A   PY+ASMG+Y+F   VL++LL+ S P S DFG EIIP +  DHNVQ +LFNDYWEDIGTI SF++ANLALT QP   F FYD + P YT  R+LPP+K+  C++ ++II  GC L+ C +QHS++GVRSR+ESG    + ++MGAD+YQ  +E    +    VP+G G
Sbjct:  144 ADITLSVLPVEEQVASSFGLLQVDHSGRVTAFSEKPQGEALTRMRVDTTDFGLTPAEAAHKPYLASMGIYVFNRQVLIDLLKQS-PQSTDFGKEIIPMAATDHNVQTYLFNDYWEDIGTISSFYEANLALTRQPQPPFSFYDEKAPIYTRPRYLPPSKLLDCQVTESIIGEGCILKNCQIQHSVLGVRSRIESGCVIDNALLMGADFYQPFAERDHKIKNNSVPLGIG 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.522e-65
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQP-AKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M  DTT+LGL    A + PYIASMG+Y+    V+L LLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R LPP+KV    + D++I  GC ++ C + HS+VG+RS +  G   +DT++MGADYY+TE++   L  +  +PIG G+N
Sbjct:  186 ADITVAALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLDDARAKEMPYIASMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKN 416          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_CYAP73.346e-6853.28Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_CYAA53.699e-6751.97Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGS_BETVU4.090e-6651.09Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA5.342e-6651.08Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC6.977e-6650.65Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH9.112e-6651.08Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU1.554e-6550.22Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS2_VICFA3.462e-6550.22Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_CYAP43.462e-6550.88Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGS_WHEAT4.522e-6551.08Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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