FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.522e-65
Identity = 118/231 (51.08%), Postives = 163/231 (70.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQP-AKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M  DTT+LGL    A + PYIASMG+Y+    V+L LLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R LPP+KV    + D++I  GC ++ C + HS+VG+RS +  G   +DT++MGADYY+TE++   L  +  +PIG G+N
Sbjct:  226 ADITVAALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLEDARAKEMPYIASMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETEADKKLLAEKGGIPIGIGKN 456          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.522e-65
Identity = 117/228 (51.32%), Postives = 166/228 (72.81%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            ADIT+S VP+DD +A + GLMKID  G+I  F+EKP+G  L+ MQ DT++LGLS   A   PYIASMG+Y+F+ +VL NLL   Y  + DFG EIIP S  DHN+QA+LF+DYWEDIGTI++F++ANLALT+QP+  F FY+ + P YT  R+LPPTK+    + +++I  GC +++C + HS++G+RSR+ES    +DT++MG D+Y++ SE  +L A  ++  G G
Sbjct:  154 ADITLSVVPVDDRKAPELGLMKIDAQGRITDFSEKPQGEALRAMQVDTSVLGLSAEKAKLNPYIASMGIYVFKKEVLHNLL-EKYEGATDFGKEIIPDSASDHNLQAYLFDDYWEDIGTIEAFYEANLALTKQPSPDFSFYNEKAPIYTRGRYLPPTKMLNSTVTESMIGEGCMIKQCRIHHSVLGIRSRIESDCTIEDTLVMGNDFYESSSERDTLKARGEIAAGIG 380          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.718e-64
Identity = 114/231 (49.35%), Postives = 168/231 (72.73%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   +V+L+LLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R+LPP+K+    + D++I  GC ++ C + HS++G+RS +  G   +DT++MGADYY+T+++   L A+  +PIG G++
Sbjct:  233 ADITVAALPMDEKRATAFGLMKIDDEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASMGIYVVSKNVMLDLLRDQFPGANDFGSEVIPGATDLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRTLLAAKGSIPIGIGRD 463          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 243.817 bits (621), Expect = 6.530e-64
Identity = 114/231 (49.35%), Postives = 163/231 (70.56%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPA-KFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            +DITV+ +PMD+ RA+ +GLMKID  G+I++FAEKPKG  LK M  DTT+LGL    A + PYIASMG+Y+   +V+L LLR  +P +NDFGSE+IP +      VQA+L++ YWEDIGTI++F++ANL +T++P   F FYD   P YT  R LPP+KV    + D++I  GC ++ C + HS+VG+RS +  G   +D+++MGADYY+TE++   L  +  +PIG G+N
Sbjct:  227 SDITVAALPMDEKRATAFGLMKIDEEGRIVEFAEKPKGEQLKAMMVDTTILGLDDVRAKEMPYIASMGIYVISKNVMLQLLREQFPGANDFGSEVIPGATNIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRHLPPSKVLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETEADKKLLGEKGGIPIGIGKN 457          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.528e-64
Identity = 117/229 (51.09%), Postives = 160/229 (69.87%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAK-FEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            ADIT+S VP+ +  A  +GLMKID +G+++ F+EKP G  LK MQ DT  LGL    A + PYIASMG+Y+F+  VLL+LL+       DFG EIIP + KD+NVQA+LF+DYW DIGTI++F++ANL LT+QP   F FYD + P YT AR+LPPTKV    + +++IS GC ++ C + HS++G+R+R+E+    +DTM+MGADYYQ   +    L   K PIG G+
Sbjct:  144 ADITLSVVPVGEKVAPAFGLMKIDANGRVVDFSEKPTGEALKAMQVDTQSLGLDPEQAKEKPYIASMGIYVFKKQVLLDLLKEGKD-KTDFGKEIIPDAAKDYNVQAYLFDDYWADIGTIEAFYEANLGLTKQPIPPFSFYDEKAPIYTRARYLPPTKVLNADVTESMISEGCIIKNCRIHHSVLGIRTRVEADCTIEDTMIMGADYYQPYEKRQDCLRRGKPPIGIGE 371          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGL2_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.982e-62
Identity = 108/170 (63.53%), Postives = 138/170 (81.18%), Query Frame = 3
Query:  189 KFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQN 698
            K+PYIA MGVY+F+ ++LLNLLR  +P +NDFGSEIIPA+ ++ NV+A+LFNDYWEDIGTIKSFF+ANLAL EQP+KF FYD   P YTS R LPP+ +   KI D+IISHGCFL +C V+HS+VG+RSR+ S V  +DT+M+GAD+Y+T++E    LAE KVPIG G+N
Sbjct:    1 KYPYIAGMGVYIFKKEILLNLLRWRFPTANDFGSEIIPAAAREINVKAYLFNDYWEDIGTIKSFFEANLALAEQPSKFSFYDASKPMYTSRRNLPPSMISGSKITDSIISHGCFLDKCRVEHSVVGIRSRIGSNVHLKDTVMLGADFYETDAERGDQLAEGKVPIGIGEN 170          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.920e-57
Identity = 106/230 (46.09%), Postives = 158/230 (68.70%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASV-KDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAK-FEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            AD+TV+ +P+D  +A  +GLM+ D  G+I++F EKPKG  L  M  DT+  GLS   A + PY+ASMG+Y+F  D L +LL  + P   DFG E+IP ++ +   +++++F+DYWEDIGTI +F++ANLALT+QP   F FYD   P YT  R+LPP+K+   +I D+II  G  L+ CS+ HS++GVRSR+E  V  QD+++MG+D++++ SE A L     +P+G G+
Sbjct:  145 ADLTVAALPVDAKQAEAFGLMRTDEDGRILEFREKPKGDSLLEMAVDTSRFGLSAESAKERPYLASMGIYVFSRDTLFDLLHQN-PTHKDFGKEVIPEALQRGDRLKSYVFDDYWEDIGTIGAFYEANLALTQQPTPPFSFYDAEFPIYTRPRYLPPSKLVDSQITDSIIGEGSILKSCSIHHSVLGVRSRVEDEVVLQDSLLMGSDFFESSSERAVLRERGGIPLGVGK 373          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THERP (Glucose-1-phosphate adenylyltransferase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.426e-26
Identity = 64/229 (27.95%), Postives = 121/229 (52.84%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            AD+T++  P+D   AS +G++ +   G ++ F EKP+ P                        +ASMG+YLFR ++LL+L    +P +    DFG ++IP  ++   V  + F+ YW+D+GT++S+++AN+AL E   K   YDP    +T +   PP K+ +   ++ +++S+GC +   +V  SI+     +++G   +D+++M        + +   + ++ V IG
Sbjct:  146 ADVTIAVQPVDWREASRFGVVIVAEDGWVVDFEEKPERPRSN---------------------LASMGIYLFRRNLLLDLFTRDHPDAPEFIDFGRDVIPYLIRTARVATYRFDGYWQDVGTVQSYWEANMALLEDEPKLNLYDPNWRIHTRSEERPPAKILEGATVIRSLLSNGCIVEGATVIRSILSPGVIVKAGAVVRDSIVMTDSVIGPGAVVDRCIIDKHVTIG 353          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_PSEA6 (Glucose-1-phosphate adenylyltransferase 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 66/219 (30.14%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+T+  + +    A++ +G+M+I++SG+++ F EKP  P               +P+      +ASMG+Y+F T+ LLN L+    S    +DFG++I+P  + D+ V AF F D       YW+DIGT+ +F+ AN+ L E   K + YD   P +T  +  PP K        R    D+++S GC +   ++  S++ V  R+ S  +  +++++
Sbjct:  156 ADVTIGGIEVPVHEAANAFGVMQINKSGRVVSFDEKPDSPS-------------PLPEDPALA-LASMGIYVFNTEFLLNELQKDAHSLTSEHDFGNDIVPQCIADYEVHAFRFTDSLYGLKPYWKDIGTLDAFWQANIDLIEVTPKLDIYDDSWPIWTYQKQSPPAKFVFNNDNRRGSATDSMVSGGCVISGATIDRSLLFVDVRVHSYSKITESVIL 360          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_GRABC (Glucose-1-phosphate adenylyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glgC PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 72/248 (29.03%), Postives = 119/248 (47.98%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            +AD+TV C+ +    A+ +G+M++D +G+I  F EKP  P   GM           PD      +ASMG+Y+F+T  L ++LR   +     +DFG +IIP  V++    A  F+D           YW D+GT+ S++ ANL LT      + YD   P +T     PP K        R   VD++++ GC +   S+  S++    R+ S  +   T+++        + + + + +R V I  G
Sbjct:  151 QADVTVGCIEVPREEATGFGVMQVDDTGRITAFLEKPSDP--PGMP--------GQPDIA----LASMGIYVFKTKFLFDVLRRDAADPDSKHDFGGDIIPDLVENGTAIAHRFSDSCVRSSKTAEAYWRDVGTLDSYWQANLDLTNVVPTLDLYDSGWPIWTYNEISPPAKFVYDDVGRRGMAVDSLVAGGCIVSGASLSRSLISTGCRVHSFSQLHGTVVLPYADIARSARLRNTVVDRGVRIPEG 384          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGS_HORVU4.522e-6551.08Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_SYNY34.522e-6551.32Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGS_BRANA1.718e-6449.35Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ6.530e-6449.35Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_SYNP28.528e-6451.09Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGL2_HORVU7.982e-6263.53Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_SYNPW5.920e-5746.09Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_THERP2.426e-2627.95Glucose-1-phosphate adenylyltransferase OS=Thermom... [more]
GLGC1_PSEA61.127e-2330.14Glucose-1-phosphate adenylyltransferase 1 OS=Pseud... [more]
GLGC_GRABC1.472e-2329.03Glucose-1-phosphate adenylyltransferase OS=Granuli... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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