FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 70/222 (31.53%), Postives = 109/222 (49.10%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--PLSN-DFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL + +  P SN DFG ++IP  V      A  F           N YW D+GT+++++ ANL L     + + YD   P  ++   LPP K   DR       +++++S GC +    V HS++  R R+ S      T+++
Sbjct:  161 AECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNPT-------------PMPDNPDMA-LASMGIYVFNADYLYQLLDADHNTPDSNHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDENQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTVIL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 69/246 (28.05%), Postives = 118/246 (47.97%), Query Frame = 3
Query:    3 RPKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL--RSSYPLSN-DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV---------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPI 683
            R  AD+TV  + +    A  +G+M++D   ++++F EKP+ P             L  PD      +ASMG+Y+F T  L   L   ++ P S+ DFG  IIP +++D  V AF F D       YW D+GT++++++AN+ L     +   YD + P  +    LPP K           R + +D+I+  G  +    V+ S++G   R+ S  + +D+++         S I   + ++ V I
Sbjct:  163 RKGADVTVGALRVSREEARQFGVMQVDTDNRLVEFQEKPENPRPT----------LDDPDVC----LASMGIYVFNTRFLFERLCDDATQPDSDHDFGKNIIPGAIEDSQVFAFPFTDENRKRDAYWRDVGTLEAYYEANMDLVGVDPQLNLYDRQWPIRSFQPQLPPPKFVFGSEGRSSRRGEALDSIVCQGAIISGGCVRRSVIGTGCRINSYAQVEDSILFDDVNVGRHSRIRRAIIDKGVQI 394          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC2_ALHEH (Glucose-1-phosphate adenylyltransferase 2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 68/242 (28.10%), Postives = 109/242 (45.04%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--PLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+TV C+ +    AS +G+M +D   ++++F EKP  P     Q D  L              ASMG+Y+F    L N L +       +DFG +IIP+ +    V AF F D       YW D+GTI +F+  NL L     +   YD   P +T    LPP K        R   VD+++S GC +    ++ S++     +E G   +D +++   + +    I   + ++   +  G
Sbjct:  157 ADVTVGCLEVPVEEASAFGVMAVDGDNRVVRFQEKPADPPSIPGQSDRAL--------------ASMGIYIFNRAFLFNQLIADARKESDHDFGKDIIPSLIDQARVIAFPFRDAATGGQAYWRDVGTIDAFWRTNLELVGVNPQLNLYDKEWPIWTHQEQLPPAKFVFDDDDRRGMAVDSMVSGGCIISGAYLRRSLLFSSVVVEDGSRVEDAVILPEAHIEPGCRIRKAVIDKHCRLAAG 384          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 65/222 (29.28%), Postives = 112/222 (50.45%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMG 620
            KA +TVS + M    AS +G++++D  G++I F EKP  P              S+P    F  + SMG Y+F   VL + L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L E+ A F  Y+ + P +T    LPP         R +I+D+++ +G ++R   ++ S++G RS + S  +  + +++G
Sbjct:  142 KASLTVSALRMPLKEASQFGVIEVDAEGRMIGFEEKPANPK-------------SIPGEPDFALV-SMGNYVFEAQVLFSELVEDADNEASSHDFGKDIIPKMFPRGDVFVYDFSTNRISGEKEEVYWRDVGTIDAYWQAHMDLLEKDAPFSLYNRKWPLHTYYPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISECILLG 349          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 66/220 (30.00%), Postives = 109/220 (49.55%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH-NVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            +AD+TV C+ +    A  +G+M +D + ++ +F EKP+ P     + D TL              ASMG+Y+F    L   L     ++  S+DFG +IIP+ ++ H  V AF F+D       YW D+GT+ +F++ANL L     +   YD   P +T    LPP K        R   VD+++S GC +    + HS++     ++S  E   ++++
Sbjct:  156 EADMTVGCIHVPLKEAKAFGVMSVDENFRVTEFTEKPEHPQPSPGRSDETL--------------ASMGIYVFNAAFLYEQLIKNADAFNSSHDFGKDIIPSILRSHYRVIAFPFSDVQGGDPGYWRDVGTVDAFWNANLELIGVSPELNLYDEDWPIWTYQAQLPPAKFIFDNEDRRGMAVDSMVSGGCIIAGAWIGHSLLFSNVWVQSHTEVASSVIL 361          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 67/222 (30.18%), Postives = 109/222 (49.10%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL   R++   ++DFG ++IP  V      A  F           + YW D+GT+++++ ANL L     + + YD   P  ++   LPP K   DR       +++++S GC +    V HS++  R R+ S      T+++
Sbjct:  161 AECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNP-------------TPMPDNPDMA-LASMGIYVFNADYLYQLLETDRNASDSAHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDEHQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTVIL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC2_PSEA6 (Glucose-1-phosphate adenylyltransferase 2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 3
Query:   12 ADITVSCVPMD-DSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTK-----VDRC-KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A +TVSC+P+  +  A  +G+M +D   +I+ F EKP+ P    +  D T              +ASMG Y+F T+ L   L+    +     DFG +IIP+ +KDH V A+ F++      YW D+GT+ SF+ AN+ L         YD + P +T    LPP K      +RC   +D+++S GC +   +V+ S+      + S  E ++++++
Sbjct:  156 AKMTVSCMPVPIEEAAGAFGVMSVDEDYRILGFEEKPENPT--PLPNDPTRC------------LASMGNYVFDTEFLFEHLKHDAQNEGSERDFGKDIIPSIIKDHPVFAYPFSNDDGEVSYWRDVGTLDSFWLANMELVSPKPPLNLYDKKWPIWTYQEQLPPAKFVWEEYNRCGAAIDSVVSGGCIISGATVRKSLCFSNVHVHSYSEIEESVLL 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 70/220 (31.82%), Postives = 111/220 (50.45%), Query Frame = 3
Query:   12 ADITVSCV--PMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A++TV C+  P+D++ A  +G+M++D   ++I F EKP  P  K +  D T+             +ASMG Y+F T  L   L+   ++     DFG +IIPA +++H V AF F+        YW D+GT+ SFF AN+ L         YD + P +T    LPP K        R   VD+I+S GC +    V+  ++    R+ S    +D++++
Sbjct:  154 AEMTVCCLETPIDEA-AGAFGVMEVDSEHRVIGFEEKPAEP--KSIPSDPTMC------------LASMGNYVFNTKFLFEQLKKDANNEKSDRDFGKDIIPAIIENHKVFAFPFSSAVAGQPSYWRDVGTLDSFFQANMELLLPTPPLNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIVSGGCIISGAKVKRCVLFDEVRVCSYSFVKDSVLL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 70/220 (31.82%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP+ P       +  L              ASMG YLF T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYLFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ROSDO (Glucose-1-phosphate adenylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 67/247 (27.13%), Postives = 109/247 (44.13%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+TV C+ +    AS +G+MK+D   +I+ F EKP  P       D  L              ASMG+Y+F T+ L  ++     +   S+DFG +IIP  V+     A  F+            YW D+GT+ +F+ ANL LT+     + YD   P +T +    P K        R   V +++S GC +   S++  ++    R  S  +    + M        + + +++ +R V I  G
Sbjct:  153 ADVTVGCIEVPRMEASGFGVMKVDTEDRILDFIEKPGDPPAMPGHPDQAL--------------ASMGIYVFETEYLFKIMEECAAVPGYSHDFGGDIIPTIVRGGKAVAHPFSRSCVRTVNEEAPYWRDVGTVDAFWQANLDLTDFKPALDLYDTEWPIWTYSELTAPAKFIHNEEGRRGSAVSSMVSGGCIISGSSLERCLLFTGVRTHSFSQLNGVVSMPYAIINRNARLTNVVVDRGVVIPQG 385          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_PECCP6.183e-2231.53Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_RHOBA1.377e-2128.05Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC2_ALHEH1.377e-2128.10Glucose-1-phosphate adenylyltransferase 2 OS=Alkal... [more]
GLGC1_VIBPA1.377e-2129.28Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_NITOC1.799e-2130.00Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_ERWCT1.799e-2130.18Glucose-1-phosphate adenylyltransferase OS=Erwinia... [more]
GLGC2_PSEA61.799e-2130.73Glucose-1-phosphate adenylyltransferase 2 OS=Pseud... [more]
GLGC_SHEFN2.350e-2131.82Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB52.350e-2131.82Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_ROSDO3.069e-2127.13Glucose-1-phosphate adenylyltransferase OS=Roseoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
back to top