FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 65/220 (29.55%), Postives = 105/220 (47.73%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFN-------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TV C  VP+ ++ A  +G+M++    +++ F EKP  P       +  L              ASMG Y+F T+ L + LR    +     DFG +IIP+ +++H V A+ F        DYW D+GT+ +F+ AN+ L         YD + P +T    LPP K        R    D+I+S GC +    V+ S++    R+ S  E +  +++
Sbjct:  156 ADMTVCCQEVPVAEA-AGSFGVMEVAEDMRVVGFEEKPANPSCLPHDPERCL--------------ASMGNYVFNTEFLFDQLRKDAENVSSERDFGKDIIPSIIREHKVFAYAFKSGLGAGQDYWRDVGTLDTFWQANMELLSPEPHLNLYDAKWPIWTYQEQLPPAKFVFDDEDRRGMATDSIVSGGCIISGAKVKRSVLFNEVRICSYSEVEGAVIL 360          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ALTMD (Glucose-1-phosphate adenylyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 71/244 (29.10%), Postives = 119/244 (48.77%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            A +TVSC  VP++++ A  +G+M +D + +I  F EKP  P    +  D T              +ASMG Y+F T+ L   LR    +     DFG +IIP+ + DH V A+ F      N YW D+GTI SF++AN+ +     +   YD + P +T    LPP K        R + +++++S GC +   +++ SI     R+ S    +D +++     +   ++  ++ +R   I  G
Sbjct:  156 AKMTVSCMSVPLEEA-AGAFGVMSVDENYRINGFEEKPANPT--PLPNDPTRC------------LASMGNYVFDTEFLFEQLRVDSENMGSQRDFGKDIIPSIIADHPVYAYPFEQSGGDNAYWRDVGTIDSFWEANMEMVAPVPQLNLYDRKWPIWTYQEQLPPAKFVWEDHDRRGEAINSVVSGGCIISGSTLRSSICFSNVRVHSYGLIEDAVILPDVEIKRHCKLKRVIIDRGCVIPEG 384          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP++++ A  +G+M +D   +II+F EKP+ P     +   TL              ASMG Y+F T+ L + LR         +DFG  IIP  + +  V A+ F D       YW D+GT+ SF++AN+ L         Y+   P +T    LPP K        R   VD+++S GC +    V+ S++     + S  E ++++++
Sbjct:  156 ADLTVSCIEVPIEEA-AGSFGVMTVDDDNRIIRFDEKPQRPTELANKPGYTL--------------ASMGNYVFNTEFLFDQLRKDAADPDSEHDFGKNIIPNIIAEKLVSAYRFRDHDTNETAYWRDVGTLDSFWEANMELVSPNPSLNLYNHDWPIWTYQTQLPPAKFVFDDDSRRGYAVDSMVSGGCIVSGGKVKSSLLFSDVHIHSYAEIEESVLL 360          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHILW (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 69/220 (31.36%), Postives = 102/220 (46.36%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGV 593
            AD+T+ C+ +    A  +G+M ++   +II F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR        S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +   S+ +S++  GVR    S+LE  V
Sbjct:  154 ADVTIGCLEVPRMEAVGFGVMHVNEKDEIIAFVEKPADPP-------------PIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSATSSVVSGDCIISGASLNNSLLFTGVRANSFSKLEGAV 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SERP5 (Glucose-1-phosphate adenylyltransferase OS=Serratia proteamaculans (strain 568) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 65/222 (29.28%), Postives = 104/222 (46.85%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+    AS++G+M++D +  I++F EKP  P       D +L              ASMG+Y+F  D L  LL    S+   ++DFG ++IP         A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V HS++  R R+ S      T+++
Sbjct:  161 AQCTVACLPVPRDEASEFGVMEVDENDLILEFLEKPSNPPPMPGNPDMSL--------------ASMGIYIFNADYLFQLLEEDMSTPGSTHDFGKDLIPKITAQKAAWAHPFTLSCVTSNPELPPYWRDVGTLEAYWRANLDLASVTPELDMYDRAWPIRTHMEPLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVVHSVLFPRVRVNSFCTIDSTVLL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPS (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgC PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 65/217 (29.95%), Postives = 105/217 (48.39%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVRSRLESGVE 596
            AD+TV C+ +  S AS +G+M +D    I  F EKP  P     + D +L+              SMG+Y+F T  L+  L    ++   S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T     PP K        R + V +++S GC +   S++H+++  GVR+   + +E
Sbjct:  154 ADVTVGCLEVARSEASAFGVMDVDAKDVIRSFLEKPADPPAMPGKPDKSLV--------------SMGIYVFDTKFLIEELHRDAANPDSSHDFGKDIIPYIVKHGKAVAHHFDKSCRRSHAEDTSYWRDVGTVDAYWAANIDLTDIVPQLDLYDREWPIWTYGEITPPAKFVHDKDGRRGEAVSSLVSGGCIISGASLRHTLLFTGVRAHSYTHIE 356          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHIEC (Glucose-1-phosphate adenylyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/220 (30.91%), Postives = 102/220 (46.36%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGV 593
            AD+T+ C+ +    A+ +G+M ++   +I  F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +   S+  S++  GVR    S+LE  V
Sbjct:  154 ADVTIGCLEVPRMEATGFGVMHVNEKDEIFAFIEKPADPP-------------GIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPTSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDDDRRGSATSSVVSGDCIISGASLNKSLLFTGVRANSFSKLEGAV 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_AGRT5 (Glucose-1-phosphate adenylyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 68/220 (30.91%), Postives = 103/220 (46.82%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGV 593
            AD+T+ C+ +    A+ +G+M ++   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  LR   +    S DFG +IIP  V+     A  F D           YW D+GTI +++ AN+ LT+     + YD   P +T A   PP K        R   V +++S  C +   ++  S++  GVR    SRLE+ V
Sbjct:  154 ADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-------------GIPGNEGFA-LASMGIYVFHTKFLMEALRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAV 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_METCA (Glucose-1-phosphate adenylyltransferase OS=Methylococcus capsulatus GN=glgC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 69/221 (31.22%), Postives = 109/221 (49.32%), Query Frame = 3
Query:    9 KADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL--RSSYPLSN-DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            KAD+T+ C  VP+ D++A  +G+M++D   +I +F EKP  P               MP+       ASMG+Y+F T  L   L   +  P SN DFG +IIP  ++ + V A+ F +       YW D+GT+ S++ AN+ L     +   YD   P +T     PP K        R   VD+++S GC +    V+HS++    R+ S     D++++
Sbjct:  158 KADLTIGCMEVPLADAKA--FGVMQMDGEQRIRKFVEKPSDPP-------------PMPNRPDHA-AASMGIYIFNTAFLFEQLIKDADTPGSNHDFGMDIIPQVIQKYRVFAYRFRNAQSGVQAYWRDVGTVDSYWAANMELIGVDPELNLYDQEWPIWTYQAQTPPAKFVFDDDDRRGMAVDSMVSGGCIISGAEVRHSLLFSNVRVNSFSRVLDSVIL 362          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CLOCE (Glucose-1-phosphate adenylyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glgC PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS---NDFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIV-DAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD T+S + +    AS YG+M    +G+I +F EKPK P                        +ASMGVY+F    L   L      S   NDFG  IIPA + D  ++ A+ ++ YW D+GTI++F+++N+ L  +  +F  +DP    YT     P   +     V  +II+ GC +   +V +SI+   + +E G   QD+++M
Sbjct:  147 ADATISVINVPYEEASRYGIMNCHENGKIYEFEEKPKNPKST---------------------LASMGVYIFTWSTLREYLIKDNECSDSVNDFGKNIIPAMLGDGKSMWAYQYSGYWRDVGTIQAFWESNMDLVSRVPQFNLFDPEWRIYTPNPVKPAHYIASSACVKKSIIAEGCSVHG-TVINSILFPGAYIEEGAVIQDSIIM 331          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_SHEAM4.431e-2029.55Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_ALTMD4.431e-2029.10Glucose-1-phosphate adenylyltransferase OS=Alterom... [more]
GLGC_SACD25.787e-2030.91Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_RHILW5.787e-2031.36Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_SERP57.558e-2029.28Glucose-1-phosphate adenylyltransferase OS=Serrati... [more]
GLGC_RHOPS9.871e-2029.95Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHIEC9.871e-2030.91Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_AGRT59.871e-2030.91Glucose-1-phosphate adenylyltransferase OS=Agrobac... [more]
GLGC_METCA1.289e-1931.22Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_CLOCE1.289e-1931.40Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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