FC923320

Overview
NameFC923320
Unique NameFC923320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 247
            L+RPGRFDR I +P P   GR+EILKVH R+  +  +VD   +A +T+G  GA+L  I   A +  +R+ RT +T +D L+A
Sbjct:  296 LLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKA 376          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPET 301
            L+RPGRFDR I +P P   GR EILK+H     +A++VD   +A +TDG  GA+L  I   A +  +RD R E+T  D + A   +  G+   +E   ET
Sbjct:  307 LLRPGRFDRFIEVPLPNEDGRREILKIHTSGMALAEEVDIELLARITDGASGADLKAICTEAGMFAIRDERDEVTMADFMDAVD-KIMGVEKEEEYKQET 405          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: FTSH2_ARATH (Cell division protease ftsH homolog 2, chloroplastic OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT---DDLLQ--AAQIEERGMLDRKERSPETWRQV 313
            L+RPGRFDR++ +  P + GR +ILKVHA  K   +DV    +A  T G  GA+LAN++  AAI   R  RT I++   DD +    A +E   M D K +S   + +V
Sbjct:  382 LLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGADLANLLNEAAILAGRRARTSISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEV 490          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVNAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA---AQIEERGMLDRKER 289
            L+RPGRFDR I +P P   GR EI  ++ +K  + D+++   ++ +++G  GA++ N+   AA   +RDGR ++T  DL+ A     ++   M   KER
Sbjct:  290 LLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKER 388          
BLAST of FC923320 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 31/84 (36.90%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    2 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 253
            ++RPGRFDR + +P PG+  R +ILK+H  K  +A+D+D+  +A  T+GM GA+L  I   A +  +R  +  +  ++ L+A +
Sbjct:  315 ILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVE 398          
The following BLAST results are available for this feature:
BLAST of FC923320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
PSMR_PYRAB6.483e-1245.12Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METTH6.483e-1241.00Proteasome-activating nucleotidase OS=Methanobacte... [more]
FTSH2_ARATH6.483e-1240.37Cell division protease ftsH homolog 2, chloroplast... [more]
PSMR_SULIY8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA8.466e-1235.35Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_METMA8.466e-1236.90Proteasome-activating nucleotidase OS=Methanosarci... [more]

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Properties
Property NameValue
Genbank descriptionC31703F10EF StrClemenN Citrus clementina cDNA clone C31703F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923320 ID=FC923320; Name=FC923320; organism=Citrus clementina; type=EST; length=563bp
CCTTGTGAGACCTGGACGGTTTGACCGTAAAATTTTCATCCCTAAACCTG
GCCTTATTGGTCGTATGGAAATTCTGAAGGTCCATGCTCGTAAGAAGCCA
ATGGCTGATGATGTAGACTATCTGGCTGTTGCTAGTATGACTGATGGAAT
GGTTGGTGCAGAACTAGCTAATATAGTTGAAGTTGCTGCTATTAACATGA
TGCGTGATGGAAGGACTGAGATTACAACGGATGACTTGCTTCAAGCTGCA
CAAATAGAAGAGAGAGGAATGCTAGATAGAAAGGAGAGGAGCCCTGAGAC
ATGGAGACAAGTCGCAATCAATGAAGCAGCAATGGCTGTTGTAGCTGTGA
ACTTCCCTGACCTTAAAAATATTGAGTTTGTATGGTCTTCACCCTTTATT
CCTTTTTACGTGTGTTCTCACATGTACTGTCACATACTTATTTCTTTATT
TTTTTGAGAAGCACATGGTTGTTAATTCTGCATGGCATCAATTGATAAAC
ATATCCACCTTCTTTCAGTTGGCTGGTTTTAGAGCTTTTTGTCACANGAT
GAAGTCTATTGCG
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