FC923344

Overview
NameFC923344
Unique NameFC923344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length228
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_PENCH (Thioredoxin reductase OS=Penicillium chrysogenum GN=TRR1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   60 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            AD VI+ATGA A++L  PG + +W  GISACAVCDGA PIFR+KPL VIGGG+SA
Sbjct:  115 ADAVIIATGANARRLNLPGEETYWQNGISACAVCDGAVPIFRNKPLYVIGGGDSA 169          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_PNEJI (Thioredoxin reductase OS=Pneumocystis jiroveci GN=TRR1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 3
Query:   60 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            AD V++ATGA A++L  PG + +W RGISACAVCDGAAPIFR K L+V+GGG+SA
Sbjct:  110 ADVVVMATGAYARRLHIPGEETYWQRGISACAVCDGAAPIFRGKCLSVVGGGDSA 164          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_SCHPO (Thioredoxin reductase OS=Schizosaccharomyces pombe GN=trr1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.582e-16
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 3
Query:   60 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            AD+VI+ATGA A++L   G D +W  GISACAVCDGA PI+R+KPLAV+GGG+SA
Sbjct:  112 ADSVILATGASARRLHITGEDTYWQAGISACAVCDGAVPIYRNKPLAVVGGGDSA 166          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_NEUCR (Thioredoxin reductase OS=Neurospora crassa GN=cys-9 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.851e-16
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   60 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            AD++I+ATGA A++L  PG + +W  GISACAVCDGA PIFR+K L VIGGG+SA
Sbjct:  110 ADSIILATGASARRLHLPGEEKYWQNGISACAVCDGAVPIFRNKHLVVIGGGDSA 164          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_DICDI (Thioredoxin reductase OS=Dictyostelium discoideum GN=trrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 33/61 (54.10%), Postives = 48/61 (78.69%), Query Frame = 3
Query:   42 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESA 224
            + K + A ++I+ATGA AK++  PG   FW++G+SACAVCDGA PI+R+K L V+GGG++A
Sbjct:  108 EDKPIKAQSIIIATGATAKRMGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVVGGGDTA 168          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_CHLTR (Thioredoxin reductase OS=Chlamydia trachomatis GN=trxB PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.897e-15
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    9 NFRKHRFKVFTDSKSVLADTVIVATGAVAKKLQFPGS--DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESAM 227
            +F    F + +  ++   D  I+ATGA AK+L  PG+  + FW +G++ACAVCDGA+PIFRDK L V+GGG+SA+
Sbjct:   89 DFSVRPFVLKSGKETFTCDACIIATGASAKRLSIPGAGDNEFWQKGVTACAVCDGASPIFRDKDLFVVGGGDSAL 163          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_CHLPN (Thioredoxin reductase OS=Chlamydia pneumoniae GN=trxB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query:    9 NFRKHRFKVFTDSKSVLADTVIVATGAVAKKLQFPGS--DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESAM 227
            +F    F + +  ++   D  I+ATGA AK+L+ PG+  D FW +G++ACAVCDGA+PIF++K L VIGGG+SA+
Sbjct:   89 DFSVRPFILKSKEETYSCDACIIATGASAKRLEIPGAGNDEFWQKGVTACAVCDGASPIFKNKDLYVIGGGDSAL 163          
BLAST of FC923344 vs. ExPASy Swiss-Prot
Match: TRXB_CHLMU (Thioredoxin reductase OS=Chlamydia muridarum GN=trxB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 3
Query:    9 NFRKHRFKVFTDSKSVLADTVIVATGAVAKKLQFPGS--DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGESAM 227
            +F    F + +   +   D  I+ATGA AK+L  PG+  + FW +G++ACAVCDGA+PIFRD+ L VIGGG+SA+
Sbjct:   89 DFSVRPFVLKSGEDTFTCDACIIATGASAKRLSIPGAGDNEFWQKGVTACAVCDGASPIFRDRDLFVIGGGDSAL 163          
The following BLAST results are available for this feature:
BLAST of FC923344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TRXB_PENCH7.101e-1769.09Thioredoxin reductase OS=Penicillium chrysogenum G... [more]
TRXB_PNEJI1.211e-1667.27Thioredoxin reductase OS=Pneumocystis jiroveci GN=... [more]
TRXB_SCHPO1.582e-1667.27Thioredoxin reductase OS=Schizosaccharomyces pombe... [more]
TRXB_NEUCR7.851e-1665.45Thioredoxin reductase OS=Neurospora crassa GN=cys-... [more]
TRXB_DICDI1.749e-1554.10Thioredoxin reductase OS=Dictyostelium discoideum ... [more]
TRXB_CHLTR3.897e-1549.33Thioredoxin reductase OS=Chlamydia trachomatis GN=... [more]
TRXB_CHLPN6.646e-1549.33Thioredoxin reductase OS=Chlamydia pneumoniae GN=t... [more]
TRXB_CHLMU1.134e-1449.33Thioredoxin reductase OS=Chlamydia muridarum GN=tr... [more]

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Properties
Property NameValue
Genbank descriptionC31704A08EF StrClemenN Citrus clementina cDNA clone C31704A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923344 ID=FC923344; Name=FC923344; organism=Citrus clementina; type=EST; length=228bp
AAGTTGGCAACTTCAGAAAGCATCGTTTTAAAGTTTTTACAGATTCCAAA
TCCGTTCTTGCTGATACTGTTATTGTCGCCACCGGCGCCGTTGCCAAAAA
GTTGCAATTCCCCGGTTCAGATGCGTTCTGGAACCGTGGCATATCGGCCT
GCGCAGTGTGTGATGGAGCCGCTCCGATATTTCGGGACAAACCCTTGGCC
GTGATTGGTGGCGGGGAATCAGCCATGG
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