FC923402

Overview
NameFC923402
Unique NameFC923402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.622e-46
Identity = 95/234 (40.60%), Postives = 144/234 (61.54%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIKMENFRKKHMTYSYCYDQI 690
            VHL LD+ TG+GF S   YL G FS  IK+ A  +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G+ +  RE+R NLWFDPS D+H YS+LW   QI+F++D +PIR FK +  +G  FP  +PM +Y+++W+  DWAT GG  + N++ AP+V  +  F + GC        ++K   T+  +         +  +Q  +++  RK++  Y+YC D++
Sbjct:   54 VHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGAGN--REQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCE----ASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRV 278          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.644e-43
Identity = 89/180 (49.44%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGC 537
            + L LD+ TG+GF S   YL G FS  IKLPA  TAGVV AFY+S+ +     HDEIDFEFLGN  G+   +QTN++  G  +  RE+R  LWFDPS  +H YSILW   QI+F++D IPIR FK    +G  FP  +PM LY+++W+  DWAT GG  + N+  AP+V  +  F + GC
Sbjct:   57 LQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTN---NEHDEIDFEFLGNRTGQPAILQTNVFTGGKGN--REQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGC 231          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.663e-43
Identity = 92/231 (39.83%), Postives = 140/231 (60.61%), Query Frame = 1
Query:    4 HLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGD--FP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF-DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            +LSLD  TG GF +  +Y  G+FS  +KL    +AGVV A+YM + +      DEIDFEFLGN  G+ + IQTN+Y NG+ +  RE R++LWFDP+ D+H YSILW + Q++F++D +PIR +K +  +  +  FP  KPM L+++IW+  DWAT GG  + ++K AP+V+ + DF + GC + DP     S        +      +S +Q++     ++  + Y YC D
Sbjct:   48 NLSLDNDTGCGFQTKHMYRFGWFSMKLKLVGGDSAGVVTAYYMCSENGAGPERDEIDFEFLGNRTGQPYIIQTNVYKNGTGN--REMRHSLWFDPTKDYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPFVSSYKDFAVEGCRWKDPFPACVSTTTENWWDQYD-AWHLSKTQKMDYAWVQRNLVVYDYCKD 275          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.247e-43
Identity = 87/180 (48.33%), Postives = 116/180 (64.44%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGC 537
            + L LD+ TG+GF S   YL G FS  IKLPA  TAGVV AFY+S+ +     HDEIDFEFLGN  G+   +QTN++  G  +  RE+R  LWFDPS  +H YS+LW   QI+F++D IPIR FK    +G  FP  +PM LY+++W+  DWAT GG  + N+  AP++  +  F + GC
Sbjct:   56 LQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTN---NEHDEIDFEFLGNRTGQPVILQTNVFTGGKGN--REQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGC 230          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.818e-42
Identity = 90/231 (38.96%), Postives = 131/231 (56.71%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF-DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            + L LD  +G GF S   YL G  S  IKL    +AG V AFYM++    +   DE+DFEFLGN  G+ + +QTN++ +G     RE+R NLWFDPS DFH+Y+I W   +I+FY+D +PIR +K   +    +P  +PM +Y+T+W+  DWAT GG  ++N+  AP+   + DF + GC    P +  ++  +  E S       +SP +       R  HM Y YC D+
Sbjct:   56 IQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDT--DSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGD--REQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPGPADCPANSKNWWEGSAYH---QLSPVEARSYRWVRVNHMVYDYCTDK 279          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 91/232 (39.22%), Postives = 134/232 (57.76%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            V LSLD+ TG+GF +   YL G FS  IKL    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+ D+H YS+LW    I F++D  PIR FK +  +G  +P  +PM LY+++W+  DWAT GG+ + ++  AP+V  +  F + GC         +K   T+ ++         +  +Q  ++   RK+H  Y+YC D
Sbjct:   54 VQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFSGGKGD--REQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCE----ASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTD 276          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.289e-42
Identity = 94/229 (41.05%), Postives = 129/229 (56.33%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPT--GVSPSQRIKMENFRKKHMTYSYCYD 684
            L LD  +G+GF S   YL G  S  IKL    +AG V AFYMS+      NH+E DFEFLGN  G+ + +QTNIY NG  +  RE+R NLWFDP+ +FH YSILW+   ++F +D  PIR  K     G  F   + M +Y++IW+  DWAT GG  + ++ +AP+V  + +F +  C   P     SKC+  +      PT   +S  Q  ++   R  HM Y YC+D
Sbjct:   51 LKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDG---PNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGN--REQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEI-PTTTDLSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFD 273          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.021e-42
Identity = 91/232 (39.22%), Postives = 131/232 (56.47%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIP--TGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            + L LD+ TG+GF S   YL G FS  IKL    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+  +H+YS+LW   QI+FY+D  PIR FK +  +G  FP  +PM +Y ++W+  DWAT GG  + ++  AP++  +  F + GC        +  CD         P    +  +Q  K+   R K+  Y+YC D+
Sbjct:   53 IQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCE---ASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDR 276          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.021e-42
Identity = 92/231 (39.83%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF-DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            + L LD+ TG GF S   YL G  S  IKL    +AG V AFYM++     +  DE+DFEFLGN  G+ + +QTNI+ +G     RE+R NLWFDPS D+H Y+ILW+   I+FY+D +PIRE+K   +    +P ++PM +Y+T+W+  DWAT GG  ++++  AP+   + DF + GC    P    S+  +  E         V  ++R +    R  HM Y YC D+
Sbjct:   57 IQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVR--DELDFEFLGNRSGQPYSVQTNIFAHGKGD--REQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPGPTFCPSNPHNWWEGYAYQSLNAVE-ARRYRW--VRVNHMVYDYCTDR 280          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.010e-41
Identity = 89/231 (38.53%), Postives = 133/231 (57.58%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIP--TGVSPSQRIKMENFRKKHMTYSYCYD 684
            + L LD+ TG+GF S   YL G FS  IK+    +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+ ++H+YSILW   QI+F++D +PIR FK +  +G  FP  +PM +Y ++W+  DWAT GG  + ++  AP++  +  F + GC        +  CD         P    +  +Q  ++   R+K+  Y+YC D
Sbjct:   55 IQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCE---ASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTD 277          
The following BLAST results are available for this feature:
BLAST of FC923402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
XTH5_ARATH4.622e-4640.60Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH1.644e-4349.44Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH8_ARATH3.663e-4339.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB6.247e-4348.33Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH7_ARATH1.818e-4238.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT3.100e-4239.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH5.289e-4241.05Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHA_PHAAN9.021e-4239.22Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH6_ARATH9.021e-4239.83Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN2.010e-4138.53Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31704F06EF StrClemenN Citrus clementina cDNA clone C31704F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923402 ID=FC923402; Name=FC923402; organism=Citrus clementina; type=EST; length=691bp
GTTCATTTATCTCTAGATGAAAGAACAGGGTCTGGATTTGTGTCACATGA
CCTCTATCTTCATGGTTTCTTCAGTGCTTCAATAAAGTTGCCTGCTGATT
ATACTGCCGGCGTTGTTGTTGCCTTCTATATGTCAAATGGTGACATGTTT
GAGAAGAATCATGATGAAATAGACTTTGAGTTCTTGGGTAATATTAGAGG
CAAAAATTGGAGGATTCAGACTAATATTTATGGCAATGGAAGCACCAGCA
TCGGAAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTC
CATCAGTACAGTATTCTCTGGACTGATTCCCAGATCATATTTTATATAGA
CGGTATTCCAATTAGGGAGTTTAAGAGAACTGCATCTATGGGAGGAGATT
TTCCTGCTAAGCCGATGTCTTTGTACGCCACAATCTGGGATGGCTCTGAT
TGGGCTACAAATGGTGGCAAATACCGAGTGAACTACAAATATGCTCCCTA
TGTGACTGAATTCTCTGACTTCGTACTCCACGGATGTTCATTTGATCCTA
TTGAGCAAACTTCTTCCAAGTGTGACATAACCGAAAGTTCCAAAGTATCA
ATCCCTACTGGCGTCTCCCCATCACAGAGAATTAAAATGGAAAACTTTAG
GAAGAAGCATATGACCTATTCCTACTGCTATGACCAAATTC
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