FC923402

Overview
NameFC923402
Unique NameFC923402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.428e-41
Identity = 88/233 (37.77%), Postives = 133/233 (57.08%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSF---DPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            V L LD  +G+GF S   YL G FS  +KL    +AGVV AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+  +H YS+LW   QI+ ++D +PIR FK +  +G  FP  +PM +Y+++WD  DWAT GG  + ++  AP+   ++ F + GC       ++  ++K       K          +R++    R+K+  Y+YC D+
Sbjct:   54 VDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRW--VRQKYTIYNYCTDR 279          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.428e-41
Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDF-VLHGCSFDPIE--QTSSKC---DITESSKVSI-----PTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            ++L LD+ +GSGF S   YL+G     IKL    +AG V  FY+ +  +     DEIDFEFLGN+ G  + + TN+Y  G     RE+++ LWFDP+  FH YSILW  S I+FYIDG PIREFK    +G  +P  +PM +Y ++W+  DWAT GG  + N+   P+V  F ++   + C +  +    T+S C   D T SS  S        G+  S +  +   ++K M Y+YC D+
Sbjct:   50 LNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGL---TWDEIDFEFLGNVSGDPYIVHTNVYTQGKGD--REQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPCSPGDSTSSSSSSTSEWFSQRGMDSSSKKVLRWVQRKFMVYNYCKDK 285          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 87/228 (38.16%), Postives = 132/228 (57.89%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK-PMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            LSLD+ +GSGF S+  +L+G     +KL    +AG V  FY+ +        DEIDFEFLGN+ G  + + TN+Y  GS    +E++++LWFDP+ +FH Y I W   +IIF +DGIPIREFK + S+G  FP K PM LYA++W+   WAT GG  + ++  AP+   + ++ + GC +       S C    S        +  + + +M+  + K+M Y+YC D+
Sbjct:   54 LSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGT---TWDEIDFEFLGNLSGHPYTLHTNVYTKGSGD--KEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVW---ANGKSSCPANSS---WFTQQLDSNGQTRMKGVQSKYMVYNYCNDK 270          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.847e-41
Identity = 92/233 (39.48%), Postives = 132/233 (56.65%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGC------SFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            L LD+ +G+ F S   +L G     IKL    + G VVA+YMS+    + N DEIDFEFLGN+ G+ + +QTN+Y  G  +  REER +LWFDP+ DFH YSILW   QI+F +D IPIR ++     G  +P  +PMS+ A++W+G  WAT GG  ++++   P+V  F D+ +  C      SF   E T +  +  E S       ++  Q+   +  RK H+ Y YC D
Sbjct:   61 LKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSD---QPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDN--REERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTSFCNGESTENWWNKNEFS------SLTRVQKRWFKWVRKYHLIYDYCQD 282          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.701e-40
Identity = 92/237 (38.82%), Postives = 132/237 (55.70%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSP---SQRI------KMENFRKKHMTYSYCYD 684
            LSLD  +GSGF +   YL G     +KL    +AG V A+Y+ S GD +    DEIDFEFLGN+ G  + + TN+Y  G     RE++++LWFDP+ DFH YS+LW    I+F +D IP+REFK    MG  +P  +PM LY+++W+   WAT GG  + ++  AP+   + +F    C             ++   + S P G SP   SQR+      KM   ++K+M Y+YC D
Sbjct:   54 LSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTW----DEIDFEFLGNLTGDPYTMHTNVYTQGKGD--REQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADAC-------------VSSGGRSSCPAG-SPRWFSQRLDLTAEDKMRVVQRKYMIYNYCTD 270          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.701e-40
Identity = 88/228 (38.60%), Postives = 132/228 (57.89%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            LSLD+ +GSGF SH  +L+G     +KL    +AG V  FY+ +        DEIDFEFLGNI G  + + TN+Y  G+    +E++++LWFDP+ DFH Y I+W   ++IF IDGIPIREFK + ++G  FP  +PM LYA++W+   WAT GG  + ++  AP+   + ++ +  C +       S C    SS  +         R+K    ++K+M Y+YC D+
Sbjct:   54 LSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGT---TWDEIDFEFLGNISGHPYTLHTNVYTKGTGD--KEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDACVW---SNGKSSCS-ANSSWFTQVLDFKGKNRVKWA--QRKYMVYNYCTDK 270          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.902e-40
Identity = 88/231 (38.10%), Postives = 132/231 (57.14%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSK---VSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            L LD  +G+GF S   YL G FS  ++L    +AGVV AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G  +  RE+R  LWFDP+  +H YS+LW    I+ ++D +PIR FK +  +G  FP  +PM +Y+++WD  DWAT GG  + N+  AP+   ++ F + GC      Q    C+ T+  K         +   Q  ++   R+K+  Y+YC D+
Sbjct:   57 LILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGN--REQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCE-AATPQEVQVCN-TKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDK 280          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.790e-40
Identity = 85/229 (37.12%), Postives = 131/229 (57.21%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            V L+LD  +GSGF S D YL G FS  +KL    +AG V +FY+S+G+     HDEID EF+GN+ G  + + TN++ NG     +E ++ LWFDP+ DFH Y I+W    IIF +D +P+R FK+   +   +P +KPM L+AT+WDGS WAT  G  ++++  AP+V  +  +  + C  +      S     E +   I   +  ++   +    + +M+Y+YC D
Sbjct:   53 VALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGE--GDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGK--KEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACVNNNPAGGWSSSWCPEGTSAWIHRELDGAELGTVAWAERNYMSYNYCAD 275          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.790e-40
Identity = 89/233 (38.20%), Postives = 130/233 (55.79%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRI------KMENFRKKHMTYSYCYD 684
            LSLD+ +GSGF S + YL G  S  +KL    +AG V   Y+ +        DEIDFEFLGN  G+ + + TN+Y  G     +E+++ LWFDP+ +FH Y+ILW   +IIF +DG PIREFK   S+G  FP  KPM +Y+++W+  DWAT GG  + ++  AP+   +  F    C +     ++ K     +SK    TG   SQ +      +M   ++ +M Y+YC D
Sbjct:   47 LSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGT---TWDEIDFEFLGNSSGEPYTLHTNVYTQGKGD--KEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEACVW-----SNGKSSCPNASKQGTTTGSWLSQELDSTAQQRMRWVQRNYMIYNYCTD 269          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.790e-40
Identity = 89/232 (38.36%), Postives = 130/232 (56.03%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESS-----KVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LSLD+ +GSGF S   YL G     +KL A  +AG V A+Y+S+       HDEIDFEFLGN  GK + + TN++  G     RE+++ LWFDP+ +FH YSI+W    IIF +D +PIR F     +G  FP ++PM +Y+++W+  DWAT GG  + ++  AP+   +  F    C+       SS CD    S     K+ + T ++   R ++   +K  M Y+YC D
Sbjct:   52 LSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGA---THDEIDFEFLGNETGKPYVLHTNVFAQGKGD--REQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACT------ASSGCDPKFKSSFGDGKLQVATELNAYGRRRLRWVQKYFMIYNYCSD 272          
The following BLAST results are available for this feature:
BLAST of FC923402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
XTH_TOBAC3.428e-4137.77Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH3.428e-4139.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH5.847e-4138.16Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH10_ARATH5.847e-4139.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH1.701e-4038.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH1.701e-4038.60Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC2.902e-4038.10Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ3.790e-4037.12Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH22_ARATH3.790e-4038.20Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH15_ARATH3.790e-4038.36Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC31704F06EF StrClemenN Citrus clementina cDNA clone C31704F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923402 ID=FC923402; Name=FC923402; organism=Citrus clementina; type=EST; length=691bp
GTTCATTTATCTCTAGATGAAAGAACAGGGTCTGGATTTGTGTCACATGA
CCTCTATCTTCATGGTTTCTTCAGTGCTTCAATAAAGTTGCCTGCTGATT
ATACTGCCGGCGTTGTTGTTGCCTTCTATATGTCAAATGGTGACATGTTT
GAGAAGAATCATGATGAAATAGACTTTGAGTTCTTGGGTAATATTAGAGG
CAAAAATTGGAGGATTCAGACTAATATTTATGGCAATGGAAGCACCAGCA
TCGGAAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTC
CATCAGTACAGTATTCTCTGGACTGATTCCCAGATCATATTTTATATAGA
CGGTATTCCAATTAGGGAGTTTAAGAGAACTGCATCTATGGGAGGAGATT
TTCCTGCTAAGCCGATGTCTTTGTACGCCACAATCTGGGATGGCTCTGAT
TGGGCTACAAATGGTGGCAAATACCGAGTGAACTACAAATATGCTCCCTA
TGTGACTGAATTCTCTGACTTCGTACTCCACGGATGTTCATTTGATCCTA
TTGAGCAAACTTCTTCCAAGTGTGACATAACCGAAAGTTCCAAAGTATCA
ATCCCTACTGGCGTCTCCCCATCACAGAGAATTAAAATGGAAAACTTTAG
GAAGAAGCATATGACCTATTCCTACTGCTATGACCAAATTC
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