FC923402

Overview
NameFC923402
Unique NameFC923402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.443e-40
Identity = 85/228 (37.28%), Postives = 131/228 (57.46%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK-PMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            LSLD+ +GSGF S+  +L+G     +KL    +AG V  FY+ +        DEIDFEFLGNI G  + + TN+Y  GS    +E++++LWFDP+ +FH Y I W   +IIF +DGIPIREF    S G  FP K PM LYA++W+   WAT GG  + ++  AP+   + ++ + GC +      + K  +  ++       +  + + +M+  + K+M Y+YC D+
Sbjct:   49 LSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGT---TWDEIDFEFLGNISGHPYTLHTNVYTKGSGD--KEQQFHLWFDPTANFHTYCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVW-----VNGK-SVCPANSQWFTQKLDSNGQTRMKGVQSKYMVYNYCSDK 265          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.103e-39
Identity = 89/233 (38.20%), Postives = 134/233 (57.51%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPT---GVSPSQRIKMENFRKKHMTYSYCYDQ 687
            + L LD+ TG+GF +   YL G FS +IK+    +AG V AF +S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+  +H+YS+LW   QI+F +D IPIR FK    +G  FP  +PM +Y ++W+  DWAT GG  + ++  AP+V E+  F + GC        +S+   T+  +    T    +   Q  +++  R+K   Y+YC D+
Sbjct:   54 IQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNA---EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCE----ASVNSRFCATQGKRWWDQTEFRDLDSFQWRRLKWVRQKFTIYNYCTDR 277          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.881e-39
Identity = 84/228 (36.84%), Postives = 132/228 (57.89%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAK-PMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            LSLD+ +GSGF S+  +L+G     +KL    +AG V  FY+ +        DEIDFEFLGNI G  + + TN+Y  G+    +E++++LWFDP+ +FH Y I W   +IIF +DGIPIREFK   ++G  FP + PM LYA++W+   WAT GG  + ++  AP+   + ++ + GC +       S C    ++       +  + + +M+  + K+M Y+YC D+
Sbjct:   54 LSLDKSSGSGFQSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGT---TWDEIDFEFLGNISGHPYTLHTNVYTKGTGD--KEQQFHLWFDPTVNFHTYCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGCVW---ANGKSSC---SANSPWFTQKLDSNGQTRMKGVQSKYMIYNYCTDK 270          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.457e-39
Identity = 85/227 (37.44%), Postives = 126/227 (55.51%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LSLD+ +GSGF S + YL G     IKL A  +AG V A+Y+ +        DEIDFEFLGN+ G  + + TN++  G     RE+++ LWFDP+ DFH YSILW   +IIF +DG PIREFK   S G  FP  +PM +Y+++W+  +WAT GG  + ++  AP+   +  F    C     + +        S+   +   +  + + +M   +  +M Y+YC D
Sbjct:   50 LSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPG---STWDEIDFEFLGNLSGDPYTLHTNVFTQGKGD--REQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEACVVINGQSSCPNVSGQGSTGSWLSQELDSTGQEQMRWVQNNYMIYNYCTD 271          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 86/232 (37.07%), Postives = 127/232 (54.74%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVS-----IPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LSLD  +GSGF S   YL G     +KL A  +AG V A+Y+S+       HDEIDFEFLGN  GK + + TN++  G  +  RE+++ LWFDP+ +FH YS++W    IIF +D +PIR F     +G  FP  +PM +Y+++W+  DWAT GG  + ++  AP+   +  F    C+   +   SS CD    S  +     +   ++   R ++   +K  M Y YC D
Sbjct:   51 LSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEG---PTHDEIDFEFLGNETGKPYVLHTNVFAQGKGN--REQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACT---VSSGSSFCDPKFKSSFTNGESQVANELNAYGRRRLRWVQKYFMIYDYCSD 274          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 87/227 (38.33%), Postives = 126/227 (55.51%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LSLD+ +GSGF S   YL G     +KL A  +AG V A+Y+S+       HDEIDFEFLGN+ G  + + TNI+  G  +  RE+++ LWFDP+ +FH YSI+W    IIF +D  PIR FK    +G  FP  +PM +Y+++W+  DWAT GG  + ++  AP+   + +F           + SSK  I+ S        +    R ++   +K  M Y+YC D
Sbjct:   56 LSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQG---PTHDEIDFEFLGNLSGDPYILHTNIFTQGKGN--REQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNF--------KAIEFSSKSSISNSGAEYEANELDAYSRRRLRWVQKYFMIYNYCSD 269          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 85/226 (37.61%), Postives = 131/226 (57.96%), Query Frame = 1
Query:   10 SLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            +LD+ +GSGF S   YL G     IKL    +AG V A+Y+S+     +  DEIDFEFLGN+ G+ + I TN++  G  +  RE ++ LWFDP+ DFH Y++LW    IIF +DGIPIR FK   + G  +P ++PM +Y+++W+  DWAT GGK + ++  AP+   +  F    C           C+   +S +   T ++ +Q  +++  +K +M Y+YC D
Sbjct:   52 TLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKG---ETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGN--REMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDCCSRTSIWNWVTCNANSNSWMW--TTLNSNQLGQLKWVQKDYMIYNYCTD 270          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37
Identity = 84/226 (37.17%), Postives = 131/226 (57.96%), Query Frame = 1
Query:   10 SLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            +LD+ +GSGF S   YL G     +KL A  +AG V A+Y+S+     +  DEIDFEFLGN+ G+ + + TN++  G  +  RE ++ LWFDP+ DFH Y++LW    IIF +DGIPIR FK   + G  +P ++PM +Y+++W+  DWAT GGK + ++  AP+   +  F    C           C+   +S +   T ++ +Q  +M+  +  +M Y+YC D
Sbjct:   51 TLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKG---ETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGN--REMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDCCSRTSLLNWVTCNANSNSWMW--TTLNSNQYGQMKWVQDDYMIYNYCTD 269          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.922e-37
Identity = 89/229 (38.86%), Postives = 131/229 (57.21%), Query Frame = 1
Query:   10 SLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDF-VLHGCSFDPIEQTSSKCDIT--ESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            +LD+ +GSGF S   YL G     +KL A  +AG V A+Y+S+        DEIDFEFLGN  G  + I TN++  G     RE ++ LWFDP+ DFH Y++ W    IIF +DGIPIR FK     G  +P  +PM +Y+++W+  DWAT GG+ ++++  AP+   + +F     CS     +TSS   +T   +S   + T ++P+Q  KM   ++  M Y+YC D
Sbjct:   55 TLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTA---WDEIDFEFLGNRTGHPYTIHTNVFTGGKGD--REMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFNDQSSCS-----RTSSSKWVTCEPNSNSWMWTTLNPAQYGKMMWVQRDFMIYNYCTD 273          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.690e-37
Identity = 89/228 (39.04%), Postives = 126/228 (55.26%), Query Frame = 1
Query:    7 LSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYD 684
            LSLD+ +GSGF S   YL G     IKL    +AG V  FY+ S G  +    DEIDFEFLGN+ G  + + TN+Y  G     +E++++LWFDP+ +FH YSILW   +II  +D  PIREFK   S+G  FP  KPM +YA++W+  DWAT GG  + ++  AP++  + +                K D   +S        S SQ  +++  +K +M Y+YC D
Sbjct:   48 LSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTW----DEIDFEFLGNMSGDPYTLHTNVYTQGKGD--KEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNI---------------KIDSKPNSNWYTQEMDSTSQ-ARLKWVQKNYMIYNYCTD 253          
The following BLAST results are available for this feature:
BLAST of FC923402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
XTH19_ARATH8.443e-4037.28Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN1.103e-3938.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH1.881e-3936.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH2.457e-3937.44Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH16_ARATH9.335e-3937.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.592e-3838.33Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH12_ARATH3.547e-3837.61Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.032e-3737.17Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH3.922e-3738.86Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH24_ARATH6.690e-3739.04Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704F06EF StrClemenN Citrus clementina cDNA clone C31704F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923402 ID=FC923402; Name=FC923402; organism=Citrus clementina; type=EST; length=691bp
GTTCATTTATCTCTAGATGAAAGAACAGGGTCTGGATTTGTGTCACATGA
CCTCTATCTTCATGGTTTCTTCAGTGCTTCAATAAAGTTGCCTGCTGATT
ATACTGCCGGCGTTGTTGTTGCCTTCTATATGTCAAATGGTGACATGTTT
GAGAAGAATCATGATGAAATAGACTTTGAGTTCTTGGGTAATATTAGAGG
CAAAAATTGGAGGATTCAGACTAATATTTATGGCAATGGAAGCACCAGCA
TCGGAAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTC
CATCAGTACAGTATTCTCTGGACTGATTCCCAGATCATATTTTATATAGA
CGGTATTCCAATTAGGGAGTTTAAGAGAACTGCATCTATGGGAGGAGATT
TTCCTGCTAAGCCGATGTCTTTGTACGCCACAATCTGGGATGGCTCTGAT
TGGGCTACAAATGGTGGCAAATACCGAGTGAACTACAAATATGCTCCCTA
TGTGACTGAATTCTCTGACTTCGTACTCCACGGATGTTCATTTGATCCTA
TTGAGCAAACTTCTTCCAAGTGTGACATAACCGAAAGTTCCAAAGTATCA
ATCCCTACTGGCGTCTCCCCATCACAGAGAATTAAAATGGAAAACTTTAG
GAAGAAGCATATGACCTATTCCTACTGCTATGACCAAATTC
back to top