FC923402

Overview
NameFC923402
Unique NameFC923402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.320e-36
Identity = 84/232 (36.21%), Postives = 127/232 (54.74%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKP-MSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDIT-ESSKVSIP--TGVSPSQRIKMENFRKKHMTYSYCYD 684
            + L LD+  GS   S   +L G     IKL    +AG V A+Y+S+       HDEIDFEFLGN  G+ + I TN+Y  G  +  RE+++  WF+P++ FH Y+I W  S++++++DG PIR F+   S G  +P K  M ++A++W+  DWAT GG+ + N+  AP+V E   +    C +          D T  S+  + P  + ++ SQ  KM+  R   M Y YC D
Sbjct:   49 LRLVLDKSAGSAIKSKVAHLFGSVEMLIKLVPGNSAGTVAAYYLSSTG---STHDEIDFEFLGNATGQPYTIHTNLYAQGKGN--REQQFRPWFNPTNGFHNYTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWKGSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKD 275          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 71/230 (30.87%), Postives = 120/230 (52.17%), Query Frame = 1
Query:    1 VHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPA-KPMSLYATIWDGSDWATNGGKYRVNYKYAPYVTEFSDFVLHGCSFDPIEQTSSKCDITESSKVSIPTGVSPSQRIKMENFRKKHMTYSYCYDQ 687
            + L+LD+ +GSGF S  +Y  G+F+  IK P   + GV+ +FY+ +       HDE+ F+ LG   G  + + TN+Y  G    G+++R+ LWFDP+ D+H YS LW  +Q++FY+D  PIR + +   +   +P+ + M L  ++ +GS          ++ K  PY+ +F    + GC  +       KC  T+         +S  ++    N RK ++ Y YC D+
Sbjct:   45 LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRS---SRHDELCFQILGK-NGPPYLLNTNMYLYGEG--GKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDV--YYPSVQTMFLMGSVQNGS---------IIDPKQMPYIAKFQASKIEGCKTE--FMGIDKC--TDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDR 253          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = 1
Query:   88 LPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSD---------WATNGGKYRVNYKYAPY 501
            L A    G+V +FY+ + D+     DEID E++G   G N + Q+N +  G T+      ++    P+D FH Y++ W   +  +Y+DG  +R    T+S G  +P  PM L   IW G D         WA  GG+   NY  AP+
Sbjct:  113 LKAANGTGIVSSFYLQSDDL-----DEIDIEWVG---GDNTQFQSNFFSKGDTTTYDRGEFHGVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEG--YPQSPMYLMMGIWAGGDPDNAAGTIEWA--GGE--TNYNDAPF 245          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   43 SHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGS---DWATNGGKYRVNYKYAPY 501
            S ++Y +G +  S+K PA  T G+V +F+   G       DEID EFLG    K   +Q N Y NG    G E+  +L FD S  FH Y+  W    I +Y+DG+     K TA+   + P+ P  +   +W+G+   DW   G     N  YA Y
Sbjct:   89 STNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTAT--ANIPSTPGKIMMNLWNGTGVDDWL--GSYNGANPLYAEY 229          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 53/150 (35.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:   55 YLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWATNGGKYR-VNYKYAPY 501
            Y +G +  S+K PA  T G+V +F+   G       DEID EFLG    K   +Q N Y NG    G E+  NL FD S  FH Y+  W    I +Y+DG+     K TA+   + P+ P  +   +W+G+   +  G Y   N  YA Y
Sbjct:   94 YGYGLYEVSMK-PAKNT-GIVSSFFTYTGPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG--GHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGV----LKHTATT--NIPSTPGKIMMNLWNGTGVDSWLGSYNGANPLYAEY 230          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 1
Query:   25 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDG---SDW--ATNG 465
            +G  F +++ Y +G++  S++  A    GVV +F+   G   +   DEID E LG       ++Q N Y NG      E+ Y+L FD S+ +H Y   W  + I +Y+DG   RE  R      D P  P  +    W G    DW  A NG
Sbjct:  635 SGGEFRTNNFYHYGYYECSMQ--AMKNDGVVSSFFTYTGPSDDNPWDEIDIEILGK---NTTQVQFNYYTNGQGK--HEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG---REVYRATQ---DIPKTPGKIMMNAWPGLTVDDWLKAFNG 773          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 48/155 (30.97%), Postives = 66/155 (42.58%), Query Frame = 1
Query:   64 GFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDG---SDWATNGGKY------RVNYKYAPY 501
            G+    +++ A    G+V +F+   G       DEID EFLG    K   +Q N Y NG    G E  +NL FD S DFH Y   W    I FY+DG  +    R      + P  P  +   +W G    +W    G+Y      +  Y+Y  Y
Sbjct:  102 GYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVG--GNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTR------NIPVTPGKIMMNLWPGIGVDEWL---GRYDGRTPLQAEYEYVKY 242          
BLAST of FC923402 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 52/179 (29.05%), Postives = 77/179 (43.02%), Query Frame = 1
Query:   25 TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKR-----TASMGGDFPAKPMSLYATIWDGSDWATNGGKYR-----VNYKYAPYVTEFSDFVLH 531
            TGS   S   +L+G   AS+++    + GVV AF     D+     DEIDFE+LG   G     Q+N Y  G     R +R+ +  D    +H Y I W   +II+Y+DG   R   +       S    +P  PM L   +W G       G        ++++ +P + E   F  H
Sbjct:  177 TGSLITSTRSFLYG--KASVRMKTARSRGVVTAF-----DLTSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQTPMRLEIAVWPGGSETNGPGTINWAGGLIDWENSPDIIEKGQFTAH 345          
The following BLAST results are available for this feature:
BLAST of FC923402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
XTH26_ARATH3.320e-3636.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH6.939e-2630.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRH1_YEAST1.960e-1232.65Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
GUB_PAEMA3.343e-1234.62Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_PAEPO4.367e-1235.33Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
XYND_RUMFL3.697e-1132.24Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
GUB_CLOTH4.828e-1130.97Beta-glucanase OS=Clostridium thermocellum (strain... [more]
CRR1_YEAST6.305e-1129.05Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC31704F06EF StrClemenN Citrus clementina cDNA clone C31704F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923402 ID=FC923402; Name=FC923402; organism=Citrus clementina; type=EST; length=691bp
GTTCATTTATCTCTAGATGAAAGAACAGGGTCTGGATTTGTGTCACATGA
CCTCTATCTTCATGGTTTCTTCAGTGCTTCAATAAAGTTGCCTGCTGATT
ATACTGCCGGCGTTGTTGTTGCCTTCTATATGTCAAATGGTGACATGTTT
GAGAAGAATCATGATGAAATAGACTTTGAGTTCTTGGGTAATATTAGAGG
CAAAAATTGGAGGATTCAGACTAATATTTATGGCAATGGAAGCACCAGCA
TCGGAAGAGAAGAGAGATACAATCTCTGGTTTGATCCTTCTGATGATTTC
CATCAGTACAGTATTCTCTGGACTGATTCCCAGATCATATTTTATATAGA
CGGTATTCCAATTAGGGAGTTTAAGAGAACTGCATCTATGGGAGGAGATT
TTCCTGCTAAGCCGATGTCTTTGTACGCCACAATCTGGGATGGCTCTGAT
TGGGCTACAAATGGTGGCAAATACCGAGTGAACTACAAATATGCTCCCTA
TGTGACTGAATTCTCTGACTTCGTACTCCACGGATGTTCATTTGATCCTA
TTGAGCAAACTTCTTCCAAGTGTGACATAACCGAAAGTTCCAAAGTATCA
ATCCCTACTGGCGTCTCCCCATCACAGAGAATTAAAATGGAAAACTTTAG
GAAGAAGCATATGACCTATTCCTACTGCTATGACCAAATTC
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