FC923424

Overview
NameFC923424
Unique NameFC923424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            ++F+GGLSW   +  L +AF  FG +++ +++++R +GR RGFGF+ + D  A   AI EM G+E   R I VN A  +
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG LSW V +  LEN F+  GK++E +++ +R SGR +GFGF+T +  + +  AI  ++G +   R I V++A+ +
Sbjct:  257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG L+W V +  LE  F   GK+++ +++ +R SGR RGFGF+TY+    +++AI  + G +   R I V+ A+ +
Sbjct:  188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13
Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG L+W V +  LE  F   GK+++ +++ +R SGR RGFGF+TY+    +++AI  + G +   R I V+ A+ +
Sbjct:  194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG LSW V +  L+  F   G +++ +++ +R SGR RGFGF+TY+  + ++DAI  ++G +   R I V+ A+ +
Sbjct:  207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            NR++VG LSW V +  L+  F   G +++ +++ +R SGR RGFGF+TY+  + ++DAI  ++G +   R I V+ A+ +
Sbjct:  208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            RI+VG + W + + +LE  F   GK++  +++ +R +GR RGFGF+T A    M DAI  + G+    R I VN A+ +
Sbjct:  231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.321e-12
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            RI+VG + W++ + +LE  F   GK++  +++ +R SGR RGFGF+T +    M +AI  + G+    R I VN A+ +
Sbjct:  192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.170e-12
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            R++VG L W+V   +LE  F   GK++E +++ +R +GR RGFGF+T +D   +++AI  + G+    R I VN A+ +
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353
            D  ++F+GGLSW  +   L + F +FG+I EC +M +  + R RGFGF+T+AD  ++D  +     E+  +    +V    +AQPKM
Sbjct:   19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105          
The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRP2_ARATH1.607e-1340.51Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_ARATH2.741e-1338.7529 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICSY6.107e-1337.5029 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL6.107e-1337.5030 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_NICSY1.042e-1237.5029 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL1.042e-1237.5031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY1.777e-1237.9731 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY2.321e-1236.7128 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH5.170e-1237.9731 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
MSI2H_MOUSE8.819e-1236.78RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC31704H05EF StrClemenN Citrus clementina cDNA clone C31704H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bp
GTCCCGAACACGTCTAATTAAACAGCTCTAGAGTTTCGCAAAGTGAATAC
ACGACAGAAAATATCAACAGCGAATAATAGTGATTGTTTGCAATGGCTGG
AAAAGACGAGAACAGGATATTTGTCGGAGGGCTGTCCTGGAACGTCACTG
AGCGACAGCTCGAAAACGCGTTTGATCGTTTTGGAAAAATAATCGAGTGC
CAGATCATGTTGGAAAGAGGTTCAGGCCGTCCACGTGGGTTCGGATTTAT
TACATATGCAGACCGTCGGGCGATGGATGATGCTATCAGAGAAATGCATG
GGCGCGAGTTTGGTGATAGGGTCATCTCTGTGAATAAGGCCCAGCCAAAA
ATGGGAGGTGAGGTTT
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