FC923424
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13 Identity = 32/79 (40.51%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 ++F+GGLSW + L +AF FG +++ +++++R +GR RGFGF+ + D A AI EM G+E R I VN A + Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13 Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 NR++VG LSW V + LEN F+ GK++E +++ +R SGR +GFGF+T + + + AI ++G + R I V++A+ + Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13 Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 3 Query: 111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 NR++VG L+W V + LE F GK+++ +++ +R SGR RGFGF+TY+ +++AI + G + R I V+ A+ + Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.107e-13 Identity = 30/80 (37.50%), Postives = 51/80 (63.75%), Query Frame = 3 Query: 111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 NR++VG L+W V + LE F GK+++ +++ +R SGR RGFGF+TY+ +++AI + G + R I V+ A+ + Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12 Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 NR++VG LSW V + L+ F G +++ +++ +R SGR RGFGF+TY+ + ++DAI ++G + R I V+ A+ + Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12 Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 3 Query: 111 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 NR++VG LSW V + L+ F G +++ +++ +R SGR RGFGF+TY+ + ++DAI ++G + R I V+ A+ + Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12 Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 RI+VG + W + + +LE F GK++ +++ +R +GR RGFGF+T A M DAI + G+ R I VN A+ + Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.321e-12 Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 RI+VG + W++ + +LE F GK++ +++ +R SGR RGFGF+T + M +AI + G+ R I VN A+ + Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.170e-12 Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 R++VG L W+V +LE F GK++E +++ +R +GR RGFGF+T +D +++AI + G+ R I VN A+ + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.819e-12 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353 D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D + E+ + +V +AQPKM Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKM 105 The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bpback to top |