FC923440

Overview
NameFC923440
Unique NameFC923440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 55/170 (32.35%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  151 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 660
            +NLL +Q   V++  +   I+  E +   + D  D +I  L+    + +  A +    K  +N   G+NNVD++ A +  I V NTP+                  RRI E D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR   + F MN++Y   +Q
Sbjct:   15 LNLLKDQGFEVDMY-EGTGIIDKETLKQGVKD-ADALISLLSTSVDKEVIDAANNL--KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQ 179          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  334 SNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYY 648
            + MAVG++N+DV  A + GI V NTP V                 RR+VEAD F+R G    L  GW P + +G  L+G+T+G++G GRIGS  A  + + F M +IY+
Sbjct:   73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAE-IGKAFGMRIIYH 180          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 43/112 (38.39%), Postives = 58/112 (51.79%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 660
            K  +N   G+NNVDV  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA A+   + F M+++Y   +Q
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAK-RAKAFDMDILYTGPHQ 178          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
The following BLAST results are available for this feature:
BLAST of FC923440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
Y606_STAS11.774e-1432.35Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GYAR_AERPE6.742e-1440.37Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
Y752_STAHJ8.805e-1438.39Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y2577_STAA88.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2389_STAAR8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2305_STAAM8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2296_STAAC8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA38.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW8.805e-1438.32Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705A09EF StrClemenN Citrus clementina cDNA clone C31705A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923440 ID=FC923440; Name=FC923440; organism=Citrus clementina; type=EST; length=732bp
GGTTTTTCAAAGCACACGCTCTGTTTTTGGCACTTGGAACTTGAAACTGC
CAACTTAGCTTCAATGGCGAAGCCAGTTTCGATTGAAGTGTGGAACCCAA
ATGGAAAATACAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGG
ATCAATCTCTTAATCGAACAAGATTGCCGTGTTGAAATATGCACCCAGAA
GAAAACTATACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGT
GCGATGGAGTCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTT
GCTGCACTGAGTAGAGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGG
TTACAACAATGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTG
GAAACACTCCTGAAGTACTTACAGAAACAACAGCAGAGTTAGCAGCTTCG
CTCTCTCTAGCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAG
AGCTGGCTTATACGATGGATGGCTTCCAAATCTGTTCGTTGGGAACTTGC
TCAAGGGACAGACTATTGGTGTGATTGGAGCTGGTCGTATAGGATCTGCC
TATGCTAGAATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGA
TCTTTACCAGCTACACACTTGGAAAAGTTTGTCACAGCTTATGGTCAGTT
TCTAAAGCCATGGTGAACAACTGTCACTTGNA
back to top