FC923440

Overview
NameFC923440
Unique NameFC923440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+D+  A +  I V NTP+                  RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+TIG+IG G IG A A+     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 40/107 (37.38%), Postives = 52/107 (48.60%), Query Frame = 1
Query:  325 KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 645
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+TIG+IG G IG A A+     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLY 173          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 44/164 (26.83%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  172 DCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 660
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  ++G++++D++A    GI VGN P                   RR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++
Sbjct:   32 DPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAK-RAQGFDMDIDYFDTHR 181          
BLAST of FC923440 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 48/169 (28.40%), Postives = 70/169 (41.42%), Query Frame = 1
Query:  220 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG----------------------KAFSNMAVGYNNVDVNAANKYGIAVGNTPEVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 660
            E+I A IG+ C   + Q      + LF  L  A G                      K  SN +VGY+N D+ A  + G+   +TP                   RR+ E D F+RAG +         G  +  QT+G+IG GRIG   AR    GF M ++Y++ ++
Sbjct:   14 EEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHR 182          
The following BLAST results are available for this feature:
BLAST of FC923440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
Y2178_STAAB8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y2098_STAAN8.805e-1438.32Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
Y1888_STAEQ7.454e-1337.38Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
Y1879_STAES7.454e-1337.38Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
DHGY_HYPME5.342e-1126.83Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
TKRA_BACSU6.977e-1128.40Probable 2-ketogluconate reductase OS=Bacillus sub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705A09EF StrClemenN Citrus clementina cDNA clone C31705A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923440 ID=FC923440; Name=FC923440; organism=Citrus clementina; type=EST; length=732bp
GGTTTTTCAAAGCACACGCTCTGTTTTTGGCACTTGGAACTTGAAACTGC
CAACTTAGCTTCAATGGCGAAGCCAGTTTCGATTGAAGTGTGGAACCCAA
ATGGAAAATACAGAGTTGTTAGTACCAAGCCTATGCCTGGAACCCGCTGG
ATCAATCTCTTAATCGAACAAGATTGCCGTGTTGAAATATGCACCCAGAA
GAAAACTATACTCTCTGTTGAAGATATCATTGCTTTGATTGGTGACAAGT
GCGATGGAGTCATTGGACAGTTGACAGAGGACTGGGGAGAGACTTTGTTT
GCTGCACTGAGTAGAGCAGGAGGAAAGGCTTTTAGTAACATGGCTGTTGG
TTACAACAATGTTGACGTTAATGCTGCTAACAAATATGGTATTGCTGTTG
GAAACACTCCTGAAGTACTTACAGAAACAACAGCAGAGTTAGCAGCTTCG
CTCTCTCTAGCGGCTGCAAGAAGAATTGTTGAAGCAGATGAGTTTATGAG
AGCTGGCTTATACGATGGATGGCTTCCAAATCTGTTCGTTGGGAACTTGC
TCAAGGGACAGACTATTGGTGTGATTGGAGCTGGTCGTATAGGATCTGCC
TATGCTAGAATGATGGTTGAAGGGTTCAAAATGAACCTCATTTACTATGA
TCTTTACCAGCTACACACTTGGAAAAGTTTGTCACAGCTTATGGTCAGTT
TCTAAAGCCATGGTGAACAACTGTCACTTGNA
back to top