FC923449

Overview
NameFC923449
Unique NameFC923449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_NITMS (Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0432 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22
Identity = 63/183 (34.43%), Postives = 100/183 (54.64%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            D +  R D R   + R    + G + +A GS+Y EFG+ K++V VFGPR+   K M  ++ G L        F+   R   +  +   + S ++ +ALE A++LE FP+T VDVF  VL++ G      ++ ASVALADAGI M D+VA+++   +   +++D   EE+      + I  MP+
Sbjct:   12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPN 194          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEON (Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22
Identity = 65/194 (33.51%), Postives = 105/194 (54.12%), Query Frame = 2
Query:  161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            D +  R D R  ++ RP     G + +A GSAY E+G  K++ +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A+ILE FP+T +D+F  VL++        I+ AS+ALADAGI M DLVA+ +   +   +++D   EE++Y +  + +A MP + +   L   G
Sbjct:   12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_HUMAN (Exosome complex exonuclease MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21
Identity = 72/219 (32.88%), Postives = 109/219 (49.77%), Query Frame = 2
Query:  131 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733
            +++PP    +D +   P +R   + RP + R G ++ A GSAY E G TKV+ +V GPR+++                    GRL C+     FA   R     G + ++ +  L +ALE A+ L  +P+  ++V AL+LE GGS L   ++ A++ALADAG+ MYDLV    +S         L+DP   EE      L +A MP   +   L  +GE
Sbjct:   13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE 230          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRKO (Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21
Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 2
Query:  137 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            RP      D +  R D R  ++ RP     G + +A GSAY E+G  KV+ +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A++L  FP+T +DVF  +L++        I+ AS+ALADAGI M DLVA+ +   +   +++D   EE++Y +  + +A MP + +   L   G
Sbjct:    4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEGJ (Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.595e-21
Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 2
Query:  137 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            RP      D +  R D R  ++ R      G + +A GSAY E+G  K++ +V+GPRE   K +   +   L    +   F+   R + G D +  + S ++  ALE A+ILE FP+T VDVF  VL++        I+ AS+ALADAG+ M DLVA+ +   +   +++D   +E++Y +  + +A MP + +   L   G
Sbjct:    4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKNDITLLQMDG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRCJ (Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21
Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739
            LR D R   Q R    + G V++A GSA   +G T  + +V+GPRE   + +   + G +        F+T    +         + S +L +ALE A++LE +P++ +DVF  +L++ GS     ++ AS+ALADAGI M DLV  VSV  +   +++D    E++Y +G + +  MP+      L   G W+
Sbjct:   13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMPNLRRFTLLQLDGAWT 206          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULTO (Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii GN=ST0443 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            LR D R   + RP     G + +A GSA  E GNTKVI +V+GP+E   + +   +   L      T F+T  R   +  +   + S ++ +ALE  I++E FP+T +DVF  VL++      V +  AS+ALADAGI M DL+A V+V      L++D    E+ + +  + +A MPS
Sbjct:   19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPS 197          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEAC (Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum GN=Ta1293 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 58/180 (32.22%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMP 694
            D LR D R F++ RP   + G +N A GSAY E+G  K++V V+GP+E+  K     +   +    +   F+   R + G D +  + S ++ +AL  +I++E FP+  +DV+  VL++        ++ A+VALADAG+ M D+V   +   +  ++++D   EE++Y +  + IA MP
Sbjct:   15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMP 194          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEVO (Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium GN=TV0310 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 61/193 (31.61%), Postives = 104/193 (53.89%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733
            D LR D R F++ RP     G +N A GSAY E+G  K+IV V+GP+E+  K     +   +    +   F+   R + G D +  + S ++ +AL  +I++E FP+  +DV+  VL++        ++ A+VALADAGI M D+V   +   +  ++++D   EE+++ +  + +A MP   E   L   G+
Sbjct:   15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTGEIVLLQMDGD 207          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAE (Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum GN=PAE2207 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739
            +R D R   Q R      G V++A GSA   +G T  + +V+GPRE   + +   + G +        F+T    +         + S +L +ALE AI+LE +P++ +DVF  +L++ GS     ++ AS+ALADAGI M DLV  VSV  +   +++D    E+ Y +G L +  MP+      L   G W+
Sbjct:   13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMPNLKRFTLLQLDGAWT 206          
The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ECX1_NITMS5.229e-2234.43Probable exosome complex exonuclease 1 OS=Nitrosop... [more]
ECX1_THEON6.830e-2233.51Probable exosome complex exonuclease 1 OS=Thermoco... [more]
EXOS6_HUMAN1.522e-2132.88Exosome complex exonuclease MTR3 OS=Homo sapiens G... [more]
ECX1_PYRKO1.987e-2132.67Probable exosome complex exonuclease 1 OS=Pyrococc... [more]
ECX1_THEGJ2.595e-2132.67Probable exosome complex exonuclease 1 OS=Thermoco... [more]
ECX1_PYRCJ4.427e-2131.96Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_SULTO5.782e-2135.75Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
ECX1_THEAC7.551e-2132.22Probable exosome complex exonuclease 1 OS=Thermopl... [more]
ECX1_THEVO9.862e-2131.61Probable exosome complex exonuclease 1 OS=Thermopl... [more]
ECX1_PYRAE9.862e-2132.47Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]

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Properties
Property NameValue
Genbank descriptionC31705B07EF StrClemenN Citrus clementina cDNA clone C31705B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bp
GAAGTGAGAGCTTCGCGAGATGTTTTGAGGAAGTTACAAAGGAAGAAGAA
GCAAAACAAAGAGAATGGCAGCAAAGCCTAGTACTACAACAACAGCAAAA
GCCACGTACTCTCCGATTGACCCTACCAGAAAAACTCGCCCACCCATTTT
TTCTGGCTCCGATGTGGACTGGCTCCGACCCGACTCCCGTGGGTTTCACC
AGTGCAGACCCGCCTTTTTCCGCACTGGCGCTGTGAATTCAGCATCGGGG
TCTGCTTATGCTGAATTTGGAAACACCAAGGTGATTGTGTCCGTATTTGG
GCCCAGAGAAAGTAAGAAAGCAATGATGTATAGCAATATAGGTCGATTGA
ATTGTAATGTTAGCTATACAACTTTTGCTACCCCTATTCGTGGACAGGGA
TCGGACCACAAAGATTTTTCCTCTATGCTTCACAAAGCTTTGGAAGGTGC
AATAATATTGGAAACATTCCCTAAGACAACCGTGGATGTATTTGCATTGG
TTTTGGAATCTGGAGGCAGTGATCTCCCTGTGGTGATATCATGTGCTAGT
GTCGCCCTGGCGGATGCGGGCATTATGATGTATGACCTCGTTGCCTCTGT
TTCTGTGTCTTGCCTAGGGAAGAATCTTCTTATTGATCCAGTGCTGGAGG
AGGAAAGCTACCCAGACGGAAGTTTAATGATAGCTTGTATGCCTTCTCGT
TATGAAAGTCACTCATTGACGGNTACTGGGGAATGGTCA
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