FC923449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_NITMS (Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0432 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.229e-22 Identity = 63/183 (34.43%), Postives = 100/183 (54.64%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 D + R D R + R + G + +A GS+Y EFG+ K++V VFGPR+ K M ++ G L F+ R + + + S ++ +ALE A++LE FP+T VDVF VL++ G ++ ASVALADAGI M D+VA+++ + +++D EE+ + I MP+ Sbjct: 12 DENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILRVRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGTRCAALTAASVALADAGIPMRDMVAAIAAGKVADTVILDVNNEEDQAGQADMPIGYMPN 194
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEON (Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus (strain NA1) GN=TON_0030 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22 Identity = 65/194 (33.51%), Postives = 105/194 (54.12%), Query Frame = 2 Query: 161 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 D + R D R ++ RP G + +A GSAY E+G K++ +V+GPRE K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T +D+F VL++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A MP + + L G Sbjct: 12 DENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS6_HUMAN (Exosome complex exonuclease MTR3 OS=Homo sapiens GN=EXOSC6 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.522e-21 Identity = 72/219 (32.88%), Postives = 109/219 (49.77%), Query Frame = 2 Query: 131 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNI------------GRLNCNVSYTTFATPIRGQ---GSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCL---GKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733 +++PP +D + P +R + RP + R G ++ A GSAY E G TKV+ +V GPR+++ GRL C+ FA R G + ++ + L +ALE A+ L +P+ ++V AL+LE GGS L ++ A++ALADAG+ MYDLV +S L+DP EE L +A MP + L +GE Sbjct: 13 ESQPPQLYAADEEEA-PGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE 230
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRKO (Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis GN=TK1634 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.987e-21 Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 2 Query: 137 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 RP D + R D R ++ RP G + +A GSAY E+G KV+ +V+GPRE K + + L + F+ R + G D + + S ++ ALE A++L FP+T +DVF +L++ I+ AS+ALADAGI M DLVA+ + + +++D EE++Y + + +A MP + + L G Sbjct: 4 RPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGTRVAGITAASLALADAGIPMKDLVAACAAGKIDGEIVLDLNKEEDNYGEADVPVAIMPLKNDITLLQMDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEGJ (Probable exosome complex exonuclease 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_2036 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.595e-21 Identity = 66/202 (32.67%), Postives = 106/202 (52.48%), Query Frame = 2 Query: 137 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 RP D + R D R ++ R G + +A GSAY E+G K++ +V+GPRE K + + L + F+ R + G D + + S ++ ALE A+ILE FP+T VDVF VL++ I+ AS+ALADAG+ M DLVA+ + + +++D +E++Y + + +A MP + + L G Sbjct: 4 RPEGLKLIDENGRRIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIDGEIVLDLNKDEDNYGEADVPVAIMPLKNDITLLQMDG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRCJ (Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.427e-21 Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739 LR D R Q R + G V++A GSA +G T + +V+GPRE + + + G + F+T + + S +L +ALE A++LE +P++ +DVF +L++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G + + MP+ L G W+ Sbjct: 13 LRADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDNYGEGDMPVGYMPNLRRFTLLQLDGAWT 206
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULTO (Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii GN=ST0443 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.782e-21 Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 LR D R + RP G + +A GSA E GNTKVI +V+GP+E + + + L T F+T R + + + S ++ +ALE I++E FP+T +DVF VL++ V + AS+ALADAGI M DL+A V+V L++D E+ + + + +A MPS Sbjct: 19 LRLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGTRLVSLMAASMALADAGIPMRDLIAGVAVGKADGVLVLDLNEPEDMWGEADMPVAMMPS 197
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEAC (Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum GN=Ta1293 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21 Identity = 58/180 (32.22%), Postives = 101/180 (56.11%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMP 694 D LR D R F++ RP + G +N A GSAY E+G K++V V+GP+E+ K + + + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++ ++ A+VALADAG+ M D+V + + ++++D EE++Y + + IA MP Sbjct: 15 DNLRLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGVPMRDMVVGCTAGKVDGHMVLDLSKEEDNYGEADIPIAIMP 194
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THEVO (Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium GN=TV0310 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 61/193 (31.61%), Postives = 104/193 (53.89%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733 D LR D R F++ RP G +N A GSAY E+G K+IV V+GP+E+ K + + + F+ R + G D + + S ++ +AL +I++E FP+ +DV+ VL++ ++ A+VALADAGI M D+V + + ++++D EE+++ + + +A MP E L G+ Sbjct: 15 DNLRLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVKARYNMAAFSVDERKRPGPDRRTMEISKVISEALSSSIMIEQFPRAEIDVYIEVLQADAGTRIAGLTAATVALADAGIPMRDMVVGCTAGKVDGHIVLDLSKEEDNFGEADIPMAIMPKTGEIVLLQMDGD 207
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAE (Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum GN=PAE2207 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21 Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739 +R D R Q R G V++A GSA +G T + +V+GPRE + + + G + F+T + + S +L +ALE AI+LE +P++ +DVF +L++ GS ++ AS+ALADAGI M DLV VSV + +++D E+ Y +G L + MP+ L G W+ Sbjct: 13 VRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQYGEGDLPLGYMPNLKRFTLLQLDGAWT 206 The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bpback to top |