FC923449

Overview
NameFC923449
Unique NameFC923449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METKA (Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri GN=MK0381 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 67/195 (34.36%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733
            D LR D R   + RP   + G +  A GSAY E G  K++ +V+GPRE     K      + R   N++   F+   R + G D +  + S +  +ALE AI  E +P+T +D+F  VL++        IS ASVALADAGI M DLVA+ +   +   +++DP+  E+ Y +  + +A MP   +   L   G+
Sbjct:   12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMPKEGKITLLQMDGD 204          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THENV (Probable exosome complex exonuclease 1 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 64/208 (30.77%), Postives = 103/208 (49.52%), Query Frame = 2
Query:  128 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736
            +K   P+  G     +R D R   Q R      G +++A GSA   +G T  + +V+GPRE   + +   + G +        F+T    +         + S +L +ALE A++LE +P++ +DVF  +L++ GS     ++ AS+ALADAGI M DLV  VSV  +   +++D    E+ Y +G L +  MP+      L   G W
Sbjct:    2 KKPPVPLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLRRYTLLQLDGAW 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRIL (Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20
Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 2
Query:  128 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739
            +K   P+F       +R D R   Q R      G V++A GSA   +G T  + +V+GPRE   + +   + G +        F+T    +         + S +L +ALE A++LE +P++ +DVF  +L++ GS     ++ AS+ALADAG+ M DLV  VSV  +   +++D    E+ Y +G L +  MP+      L   G W+
Sbjct:    2 KKPPVPLFQNG----VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLLQLDGAWT 206          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULSO (Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus GN=SSO0735 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            D  R D R   + R      G + +A GSA  E GNTK I +V+GP+E   + +   +   L      T F+T  R   +  +   + S ++ +ALE A+++E FP+T +DVF  +L++      V +  AS+ALADAGI M DL+A V+V      +++D    E+ + +  + IA MPS
Sbjct:   16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPS 196          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAR (Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 2
Query:  173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736
            +R D R   Q R      G V++A GSA   +G T  + +V+GPRE   + +   + G +        F+T    +         + S +L +ALE A++LE +P++ +DVF  ++++ GS     ++ AS+ALADAGI M DLV  VSV  +   +++D    E++Y +G L +  MP+      L   G W
Sbjct:   13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMPNLKRFVLLQLDGAW 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_AERPE (Probable exosome complex exonuclease 1 OS=Aeropyrum pernix GN=APE_1447 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 62/192 (32.29%), Postives = 98/192 (51.04%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730
            D  R D R     RP   + G +++A GSA  EFG T+V+ +V+GPRE  ++  +  +   L        F+T  R   +  +   + S ++ +ALE  ++ E FP+T +DVF  VL++ G      ++ AS+ALADAGI M  LV  V+V  +   L++D    E+ Y +  + +A  P   E   L   G
Sbjct:   14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPDIGEITLLQLNG 205          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_ARCFU (Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus GN=AF_0493 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19
Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  164 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIA 685
            VD LR D R F + RP       +  A GS Y E G  KVI +VFGPRE   + +   +   +    +   F+   R + G D +  + S +  +A E  I+ E FP++ +D+F  VL++        ++ ASVAL DAG+ M  ++ SV+V      L++DP+ EE+++ +  +  A
Sbjct:   13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFA 190          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_CAEBR (Putative exosome complex exonuclease RRP41 OS=Caenorhabditis briggsae GN=exos-4.1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658
            R D R   Q R    R G   +A GS Y E GNTKV+ +V+GP ESK +    +   + C  S TTF+   R      D K  + S +L KA E  I+ E+FP++ +D+F  V++  GS+L   ++  S+ALADAGI M  + ++ +   +    ++D    EE+
Sbjct:   10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREET 174          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METMA (Probable exosome complex exonuclease 1 OS=Methanosarcina mazei GN=MM_2623 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 54/177 (30.51%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIA 685
            D LR D R   + RP     G ++ A GS Y E+G  K++V VFGPRE+  +    ++   +    +  +F+   R +    +   + S +  +A E  I+ E FPKT +D+F  VL++        I+ +S+ALADAGI M  L+ S +   +   +++D   EE++Y +    +A
Sbjct:   14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVA 190          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_CAEEL (Putative exosome complex exonuclease RRP41 OS=Caenorhabditis elegans GN=exos-4.1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658
            R D R   Q R    R G   +A GS Y E GNTKV+ +V+GP E K +    +   + C  S T F+   R   +  D K  + S +L KA E  I+ E FP++ +D+F  V++  GS+L   ++  S+ALADAGI M  + ++ +   +    ++D    EE+
Sbjct:   10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREET 174          
The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ECX1_METKA1.288e-2034.36Probable exosome complex exonuclease 1 OS=Methanop... [more]
ECX1_THENV1.682e-2030.77Probable exosome complex exonuclease 1 OS=Thermopr... [more]
ECX1_PYRIL2.197e-2030.62Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_SULSO4.895e-2033.70Probable exosome complex exonuclease 1 OS=Sulfolob... [more]
ECX1_PYRAR1.424e-1931.61Probable exosome complex exonuclease 1 OS=Pyrobacu... [more]
ECX1_AERPE1.424e-1932.29Probable exosome complex exonuclease 1 OS=Aeropyru... [more]
ECX1_ARCFU2.429e-1932.02Probable exosome complex exonuclease 1 OS=Archaeog... [more]
EXOS4_CAEBR4.143e-1935.15Putative exosome complex exonuclease RRP41 OS=Caen... [more]
ECX1_METMA1.575e-1830.51Probable exosome complex exonuclease 1 OS=Methanos... [more]
EXOS4_CAEEL1.021e-1733.94Putative exosome complex exonuclease RRP41 OS=Caen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705B07EF StrClemenN Citrus clementina cDNA clone C31705B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bp
GAAGTGAGAGCTTCGCGAGATGTTTTGAGGAAGTTACAAAGGAAGAAGAA
GCAAAACAAAGAGAATGGCAGCAAAGCCTAGTACTACAACAACAGCAAAA
GCCACGTACTCTCCGATTGACCCTACCAGAAAAACTCGCCCACCCATTTT
TTCTGGCTCCGATGTGGACTGGCTCCGACCCGACTCCCGTGGGTTTCACC
AGTGCAGACCCGCCTTTTTCCGCACTGGCGCTGTGAATTCAGCATCGGGG
TCTGCTTATGCTGAATTTGGAAACACCAAGGTGATTGTGTCCGTATTTGG
GCCCAGAGAAAGTAAGAAAGCAATGATGTATAGCAATATAGGTCGATTGA
ATTGTAATGTTAGCTATACAACTTTTGCTACCCCTATTCGTGGACAGGGA
TCGGACCACAAAGATTTTTCCTCTATGCTTCACAAAGCTTTGGAAGGTGC
AATAATATTGGAAACATTCCCTAAGACAACCGTGGATGTATTTGCATTGG
TTTTGGAATCTGGAGGCAGTGATCTCCCTGTGGTGATATCATGTGCTAGT
GTCGCCCTGGCGGATGCGGGCATTATGATGTATGACCTCGTTGCCTCTGT
TTCTGTGTCTTGCCTAGGGAAGAATCTTCTTATTGATCCAGTGCTGGAGG
AGGAAAGCTACCCAGACGGAAGTTTAATGATAGCTTGTATGCCTTCTCGT
TATGAAAGTCACTCATTGACGGNTACTGGGGAATGGTCA
back to top