FC923449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METKA (Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri GN=MK0381 PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20 Identity = 67/195 (34.36%), Postives = 102/195 (52.31%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE---SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGE 733 D LR D R + RP + G + A GSAY E G K++ +V+GPRE K + R N++ F+ R + G D + + S + +ALE AI E +P+T +D+F VL++ IS ASVALADAGI M DLVA+ + + +++DP+ E+ Y + + +A MP + L G+ Sbjct: 12 DGLRLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVRFRYNMA--PFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGTRCAGISAASVALADAGIEMRDLVAACAAGKVEGKVVLDPMYYEDGYGEADVPLAMMPKEGKITLLQMDGD 204
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_THENV (Probable exosome complex exonuclease 1 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20 Identity = 64/208 (30.77%), Postives = 103/208 (49.52%), Query Frame = 2 Query: 128 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736 +K P+ G +R D R Q R G +++A GSA +G T + +V+GPRE + + + G + F+T + + S +L +ALE A++LE +P++ +DVF +L++ GS ++ AS+ALADAGI M DLV VSV + +++D E+ Y +G L + MP+ L G W Sbjct: 2 KKPPVPLLQGG----VRADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGIYMRDLVIGVSVGLVDGTVVLDLNGLEDQYGEGDLPVGYMPNLRRYTLLQLDGAW 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRIL (Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.197e-20 Identity = 64/209 (30.62%), Postives = 104/209 (49.76%), Query Frame = 2 Query: 128 RKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEWS 739 +K P+F +R D R Q R G V++A GSA +G T + +V+GPRE + + + G + F+T + + S +L +ALE A++LE +P++ +DVF +L++ GS ++ AS+ALADAG+ M DLV VSV + +++D E+ Y +G L + MP+ L G W+ Sbjct: 2 KKPPVPLFQNG----VRADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGSTRVASLTAASLALADAGVYMRDLVIGVSVGLVDGAVVLDLNGLEDQYGEGDLPVGYMPNLKRFTLLQLDGAWT 206
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_SULSO (Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus GN=SSO0735 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20 Identity = 61/181 (33.70%), Postives = 96/181 (53.04%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 D R D R + R G + +A GSA E GNTK I +V+GP+E + + + L T F+T R + + + S ++ +ALE A+++E FP+T +DVF +L++ V + AS+ALADAGI M DL+A V+V +++D E+ + + + IA MPS Sbjct: 16 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKADGVIILDLNETEDMWGEADMPIAMMPS 196
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_PYRAR (Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19 Identity = 61/193 (31.61%), Postives = 99/193 (51.30%), Query Frame = 2 Query: 173 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK----DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTGEW 736 +R D R Q R G V++A GSA +G T + +V+GPRE + + + G + F+T + + S +L +ALE A++LE +P++ +DVF ++++ GS ++ AS+ALADAGI M DLV VSV + +++D E++Y +G L + MP+ L G W Sbjct: 13 VRADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGVVVLDLNGLEDNYGEGDLPVGYMPNLKRFVLLQLDGAW 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_AERPE (Probable exosome complex exonuclease 1 OS=Aeropyrum pernix GN=APE_1447 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19 Identity = 62/192 (32.29%), Postives = 98/192 (51.04%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPSRYESHSLTXTG 730 D R D R RP + G +++A GSA EFG T+V+ +V+GPRE ++ + + L F+T R + + + S ++ +ALE ++ E FP+T +DVF VL++ G ++ AS+ALADAGI M LV V+V + L++D E+ Y + + +A P E L G Sbjct: 14 DGRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALRVRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGTRTAAVTAASLALADAGIPMRALVGGVAVGKIQGVLVVDVDELEDMYGEADMPVAAAPDIGEITLLQLNG 205
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_ARCFU (Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus GN=AF_0493 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.429e-19 Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 2 Query: 164 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSNIGRLNCNVSYTTFATPIRGQ-GSDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIA 685 VD LR D R F + RP + A GS Y E G KVI +VFGPRE + + + + + F+ R + G D + + S + +A E I+ E FP++ +D+F VL++ ++ ASVAL DAG+ M ++ SV+V L++DP+ EE+++ + + A Sbjct: 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFA 190
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_CAEBR (Putative exosome complex exonuclease RRP41 OS=Caenorhabditis briggsae GN=exos-4.1 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19 Identity = 58/165 (35.15%), Postives = 88/165 (53.33%), Query Frame = 2 Query: 176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658 R D R Q R R G +A GS Y E GNTKV+ +V+GP ESK + + + C S TTF+ R D K + S +L KA E I+ E+FP++ +D+F V++ GS+L ++ S+ALADAGI M + ++ + + ++D EE+ Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVCQYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGIVETKPIVDLTSREET 174
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: ECX1_METMA (Probable exosome complex exonuclease 1 OS=Methanosarcina mazei GN=MM_2623 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18 Identity = 54/177 (30.51%), Postives = 91/177 (51.41%), Query Frame = 2 Query: 167 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK---DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIA 685 D LR D R + RP G ++ A GS Y E+G K++V VFGPRE+ + ++ + + +F+ R + + + S + +A E I+ E FPKT +D+F VL++ I+ +S+ALADAGI M L+ S + + +++D EE++Y + +A Sbjct: 14 DGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGKIVLDLNKEEDNYGEADFPVA 190
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_CAEEL (Putative exosome complex exonuclease RRP41 OS=Caenorhabditis elegans GN=exos-4.1 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17 Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 2 Query: 176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGS--DHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658 R D R Q R R G +A GS Y E GNTKV+ +V+GP E K + + + C S T F+ R + D K + S +L KA E I+ E FP++ +D+F V++ GS+L ++ S+ALADAGI M + ++ + + ++D EE+ Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREET 174 The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bpback to top |