FC923449

Overview
NameFC923449
Unique NameFC923449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: MTR3_SCHPO (Exosome complex component mtr3 OS=Schizosaccharomyces pombe GN=mtr3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 2
Query:  185 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALADAGIMMYDLVASVSV 607
            +R   +CR  + + G    A GS+Y E    K+  +V GPR SK    + +  +LNC    + F+T +R    Q  + K +S M+  A+  +I+L  +PK+++DV+  V+ES G  + L   ISCAS A+ADA I   DLV   SV
Sbjct:   29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISCASSAIADANIDCIDLVTGSSV 173          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            R D R   + R    R G    A GSAY E GNTK +  V+GP E +  +A    +   +NC  S  TF+T  R +    D K  +    L +  E AI+ +  P++ +D++  VL++ G      ++ A++A+ DAGI M D V + S   +    L D    EE+     L +A +P+
Sbjct:   13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            R D R   + R    R G    A GSAY E GNTK +  V+GP E +  +A    +   +NC  S  TF+T  R +    D K  +    L +  E AI+ +  P++ +D++  VL++ G      ++ A++A+ DAGI M D V + S   +    L D    EE+     L +A +P+
Sbjct:   13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15
Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697
            R D R   + R    R G    A GSAY E GNTK +  V+GP E +  ++    +   +NC  S  TF+T  R +    D K  +    L +  E AI+ +  P++ +D++  VL++ G      ++ A++A+ DAGI M D V + S   +    L D    EE+     L +A +P+
Sbjct:   13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192          
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: RRP41_YEAST (Exosome complex component SKI6 OS=Saccharomyces cerevisiae GN=SKI6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13
Identity = 49/148 (33.11%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  236 NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658
            ++A GS+Y E GN K+I  V GP+E + K+ M ++   LN +V+ T F+   R + S HK      +  + L +  E  ++L  +P+T +D+   VLE  G  +  +I+  ++AL DAGI M+D ++ +SV       L+D    EE+
Sbjct:   34 HAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180          
The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
MTR3_SCHPO1.333e-1736.30Exosome complex component mtr3 OS=Schizosaccharomy... [more]
EXOS4_HUMAN9.552e-1631.11Exosome complex exonuclease RRP41 OS=Homo sapiens ... [more]
EXOS4_BOVIN9.552e-1631.11Exosome complex exonuclease RRP41 OS=Bos taurus GN... [more]
EXOS4_MOUSE2.779e-1530.56Exosome complex exonuclease RRP41 OS=Mus musculus ... [more]
RRP41_YEAST2.601e-1333.11Exosome complex component SKI6 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionC31705B07EF StrClemenN Citrus clementina cDNA clone C31705B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bp
GAAGTGAGAGCTTCGCGAGATGTTTTGAGGAAGTTACAAAGGAAGAAGAA
GCAAAACAAAGAGAATGGCAGCAAAGCCTAGTACTACAACAACAGCAAAA
GCCACGTACTCTCCGATTGACCCTACCAGAAAAACTCGCCCACCCATTTT
TTCTGGCTCCGATGTGGACTGGCTCCGACCCGACTCCCGTGGGTTTCACC
AGTGCAGACCCGCCTTTTTCCGCACTGGCGCTGTGAATTCAGCATCGGGG
TCTGCTTATGCTGAATTTGGAAACACCAAGGTGATTGTGTCCGTATTTGG
GCCCAGAGAAAGTAAGAAAGCAATGATGTATAGCAATATAGGTCGATTGA
ATTGTAATGTTAGCTATACAACTTTTGCTACCCCTATTCGTGGACAGGGA
TCGGACCACAAAGATTTTTCCTCTATGCTTCACAAAGCTTTGGAAGGTGC
AATAATATTGGAAACATTCCCTAAGACAACCGTGGATGTATTTGCATTGG
TTTTGGAATCTGGAGGCAGTGATCTCCCTGTGGTGATATCATGTGCTAGT
GTCGCCCTGGCGGATGCGGGCATTATGATGTATGACCTCGTTGCCTCTGT
TTCTGTGTCTTGCCTAGGGAAGAATCTTCTTATTGATCCAGTGCTGGAGG
AGGAAAGCTACCCAGACGGAAGTTTAATGATAGCTTGTATGCCTTCTCGT
TATGAAAGTCACTCATTGACGGNTACTGGGGAATGGTCA
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