FC923449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: MTR3_SCHPO (Exosome complex component mtr3 OS=Schizosaccharomyces pombe GN=mtr3 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17 Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 2 Query: 185 SRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG--SDLPVVISCASVALADAGIMMYDLVASVSV 607 +R +CR + + G A GS+Y E K+ +V GPR SK + + +LNC + F+T +R Q + K +S M+ A+ +I+L +PK+++DV+ V+ES G + L ISCAS A+ADA I DLV SV Sbjct: 29 TRDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPRPSK-TFAFRSSAKLNCEFRLSPFSTSVRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATLAAAISCASSAIADANIDCIDLVTGSSV 173
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_HUMAN (Exosome complex exonuclease RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16 Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 2 Query: 176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 R D R + R R G A GSAY E GNTK + V+GP E + +A + +NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P+ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_BOVIN (Exosome complex exonuclease RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16 Identity = 56/180 (31.11%), Postives = 87/180 (48.33%), Query Frame = 2 Query: 176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 R D R + R R G A GSAY E GNTK + V+GP E + +A + +NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P+ Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: EXOS4_MOUSE (Exosome complex exonuclease RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 2.779e-15 Identity = 55/180 (30.56%), Postives = 87/180 (48.33%), Query Frame = 2 Query: 176 RPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK--KAMMYSNIGRLNCNVSYTTFATPIRGQG--SDHK--DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEESYPDGSLMIACMPS 697 R D R + R R G A GSAY E GNTK + V+GP E + ++ + +NC S TF+T R + D K + L + E AI+ + P++ +D++ VL++ G ++ A++A+ DAGI M D V + S + L D EE+ L +A +P+ Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPA 192
BLAST of FC923449 vs. ExPASy Swiss-Prot
Match: RRP41_YEAST (Exosome complex component SKI6 OS=Saccharomyces cerevisiae GN=SKI6 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13 Identity = 49/148 (33.11%), Postives = 82/148 (55.41%), Query Frame = 2 Query: 236 NSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYTTFATPIRGQGSDHK------DFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASVALADAGIMMYDLVASVSVSCLGKNLLIDPVLEEES 658 ++A GS+Y E GN K+I V GP+E + K+ M ++ LN +V+ T F+ R + S HK + + L + E ++L +P+T +D+ VLE G + +I+ ++AL DAGI M+D ++ +SV L+D EE+ Sbjct: 34 HAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNITKFSKFERSKSS-HKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTPLLDTNSLEEN 180 The following BLAST results are available for this feature:
BLAST of FC923449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923449 ID=FC923449; Name=FC923449; organism=Citrus clementina; type=EST; length=739bpback to top |