FC923456

Overview
NameFC923456
Unique NameFC923456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 2
Query:  317 VIRLDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKS--------------------------LVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIP-RELTTLSDLKVFDVSNNGLCGTI 649
            +++LDL N+ + G L  E+G L++L  L+L  N  SG + K + N++S                          LV +D+ +  L GEIP S  NLK L+FL LNNN LTG +P ++L  L  L    ++ N L G +
Sbjct:  241 LLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVPSKKLEALPCLGALYINGNNLTGEL 378          

HSP 2 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 45/135 (33.33%), Postives = 64/135 (47.41%), Query Frame = 2
Query:  326 LDLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNK--------------------------LTGSIPRELTTLSDLKVFDVSNNGLCGTIP 652
            LDL  ++ SGTL    G L  L  L+L  N + G +P+ELG LK+L  +D+  N+  G + K+  N++SL  L L+NN                           L G IP  LT L  L+   ++NN L G +P
Sbjct:  220 LDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLSKMGLRGEIPTSLTNLKRLRFLGLNNNNLTGFVP 354          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 42/136 (30.88%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  251 SWDPTLVNPCTWFHVTCDSNNHVI-RLDLGNSNISGTLGPEV-GQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 652
            +W P+L     W  VTC+S++  +  L L  + + G +   +  +L +L++L L  N+ISG  P  L  LK+L  + +  N+  G +P   ++ + L+ L L+NN+  GSIP  +  L+ L   +++ N   G IP
Sbjct:   44 NWSPSLSICTKWTGVTCNSDHSSVDALHLAATGLRGDIELSIIARLSNLRFLILSSNNISGTFPTTLQALKNLTELKLDFNEFSGPLPSDLSSWERLQVLDLSNNRFNGSIPSSIGKLTLLHSLNLAYNKFSGEIP 179          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11
Identity = 52/159 (32.70%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  278 CTWFHVTCDSNN-HVIRLDLGNSNISGTLGPE-VGQLQHLQYLELY-----------------------MNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFP 679
            C+W  + CDS N HVI L     ++SG +    +G+L  LQ L+L                         N ISG     +GN   L  +D+  N   G IP++  +L SL+ L+L++N    SIPR L     L   D+S+N L G++P DG   +FP
Sbjct:   55 CSWQGLFCDSKNEHVIMLIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKISALPSDFWSLNTLKNLNLSFNKISGSFSSNVGNFGQLELLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLP-DGFGSAFP 212          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y2278_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g02780 OS=Arabidopsis thaliana GN=At2g02780 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  326 LDLGNSNISGTLGPEVGQL-QHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSF 676
            LDLG +     LGPEV  L   L  + L  N    KIP+++  L +L S+D+  N+  G IP+   ++ SL+ L L+ N L+GS+P    T S +   DVS+N L G +P     +SF
Sbjct:  184 LDLGGNK----LGPEVPSLPSKLTTVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQNLLSGSLPNSSCTSSKIITLDVSHNLLTGKLPSCYSSKSF 297          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  398 LELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 652
            L+L  + ++GKI  ++ NL  L  +D+  NKL G +P+  AN+KSL F+ L+NN L GSIP+ L    +LK+    N  LC T P
Sbjct:  419 LDLSSHKLTGKIVPDIQNLTQLQKLDLSNNKLTGGVPEFLANMKSLLFINLSNNNLVGSIPQALLDRKNLKLEFEGNPKLCATGP 503          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  263 TLVNPCTWFHVT-CDSNNHVIRLDLGNSNISGTLGPE-VGQLQHLQYLELY-----------------------MNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPM 682
            T  + C+W  V  CDS+ +V+ +     ++SG++    +G++  LQ L+L                         N IS  +P  +GN  SL ++D+  N + G+IP + +NL +L  L+L+NN     +P EL     L   D+S+N L  ++PV G   +FP+
Sbjct:   48 TFSSLCSWPGVVVCDSSENVLHISASGLDLSGSIPDNTIGKMSKLQTLDLSGNKITSLPSDLWSLSLLESLNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLPV-GFGSAFPL 211          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: TMM_ARATH (Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN=TMM PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  389 LQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 652
            LQ L L  N   G IP ELGNL +L  +D+++N L G IP SF     L+ L L+ N+LTGSIP     L  L V D++ N L G +P
Sbjct:  161 LQTLVLRENGFLGPIPDELGNLTNLKVLDLHKNHLNGSIPLSFNRFSGLRSLDLSGNRLTGSIPG--FVLPALSVLDLNQNLLTGPVP 246          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y1143_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 42/111 (37.84%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  329 DLGNSNISGT-LGPEV--GQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP 652
            +L   N+ G  LGPEV      +L  + L  N    KIP+++  L  L S+D+  NK  G IP+   +L SL+ L L  N L+GS+P      S L++ DVS N L G +P
Sbjct:  180 NLQELNLGGNKLGPEVVPSLASNLITISLKNNSFGSKIPEQIKKLNKLQSLDLSSNKFTGSIPRFLLSLPSLQNLSLAQNLLSGSLPNSSLCNSKLRILDVSRNLLTGKLP 290          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/169 (30.18%), Postives = 77/169 (45.56%), Query Frame = 2
Query:  275 PCTWFHVTCDSNNHV------------IRLDLGN-----------SNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIPVDGPFRSFPMESFENKITHG 712
            PCTW  V C+S                + + +GN           + ++G L P+   L  L+YL L  N  SG+IP  L  L +++ +++ QN   G IP +  +   L  L L +N+LTG IP        L+ F+VS+N L G+IP   P    P  +F   +  G
Sbjct:   52 PCTWGGVQCESGRVTALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPE---IKIKLQQFNVSSNQLNGSIP--DPLSGMPKTAFLGNLLCG 215          
BLAST of FC923456 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  329 DLGNSNISGTLGPEVGQLQHLQYLELYMNDISGKIPKELGNLKSLVSMDMYQNKLEGEIPKSFANLKSLKFLRLNNNKLTGSIPRELTTLSDLKVFDVSNNGLCGTIP---------VDGPFRSFPMESFENKITHG 712
            D+ N N S      +  ++ L  L L  N+++G IP  +G   SL  +D+  NKL G IP S  NL+ L  L L NN L GS+P +      L   DVS N L G++P         ++    +F +E  +N++  G
Sbjct:  275 DISNGNSSLEF---IKDMKSLSILVLRNNNLTGTIPSNIGEYSSLRQLDLSFNKLHGTIPASLFNLRQLTHLFLGNNTLNGSLPTQKG--QSLSNVDVSYNDLSGSLPSWVSLPNLNLNLVANNFTLEGLDNRVLSG 406          
The following BLAST results are available for this feature:
BLAST of FC923456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
PII2_ARATH3.557e-1234.06Piriformospora indica-insensitive protein 2 OS=Ara... [more]
Y5332_ARATH7.924e-1230.88Probable inactive receptor kinase At5g53320 OS=Ara... [more]
Y2242_ARATH1.035e-1132.70Probable LRR receptor-like serine/threonine-protei... [more]
Y2278_ARATH1.352e-1137.29Probable LRR receptor-like serine/threonine-protei... [more]
Y5169_ARATH1.765e-1142.35Probable LRR receptor-like serine/threonine-protei... [more]
Y5815_ARATH3.011e-1129.09Probably inactive leucine-rich repeat receptor-lik... [more]
TMM_ARATH3.933e-1145.45Protein TOO MANY MOUTHS OS=Arabidopsis thaliana GN... [more]
Y1143_ARATH5.136e-1137.84Probable LRR receptor-like serine/threonine-protei... [more]
Y5659_ARATH8.761e-1130.18Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5614_ARATH8.761e-1132.85Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC31705C04EF StrClemenN Citrus clementina cDNA clone C31705C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923456 ID=FC923456; Name=FC923456; organism=Citrus clementina; type=EST; length=719bp
GAAATACAACCTAAAGCATTGACTTCACTTCTCAATCTCTCTCTTTGGCC
TTGATTTTATATTCATAAACACCTTTGATATTTTTTTCCTTCTTATTTCC
CACTTCACGTTTGCAATTTCTCTGATGGCTCCAATTTCTCTCATTCTCTC
CTTCTTCCTCTTCATTTCACCTGCCCTCTCAACAAACTCTGAAGGAAATG
CTTTGCATGCCTTGAGAAGCAGGTTTAAGGACCCCACAAATGTGTTGCAG
AGCTGGGACCCAACACTGGTTAATCCCTGCACTTGGTTCCATGTCACCTG
TGATTCCAACAATCATGTGATTCGTTTGGACTTGGGTAACTCTAATATTT
CTGGAACTTTGGGGCCTGAGGTTGGCCAGCTCCAGCATCTGCAGTACTTG
GAGCTTTACATGAATGACATAAGTGGGAAAATTCCGAAAGAGTTAGGTAA
TTTGAAAAGCCTTGTCAGCATGGATATGTATCAGAATAAACTGGAAGGAG
AAATACCAAAGTCCTTTGCCAATTTGAAGTCACTTAAATTTCTGCGGTTG
AACAACAACAAACTAACAGGATCAATTCCGAGGGAGCTGACCACCCTGTC
GGACCTCAAAGTTTTTGATGTTTCTAACAATGGTCTCTGTGGGACAATCC
CTGTTGATGGTCCTTTTAGAAGCTTTCCTATGGAGAGTTTTGAAAATAAA
ATAACTCATGGACCAGAGC
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