FC923458

Overview
NameFC923458
Unique NameFC923458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.801e-39
Identity = 78/117 (66.67%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   82 DTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKK 432
            D  AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A++++V DP  IF+F F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    2 DKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.842e-39
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   91 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            +VTLRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FVF F+T FGGGK+TGF ++YDS++ AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.167e-38
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = 1
Query:   97 TLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            T+RTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct:    7 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 80/122 (65.57%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRG 441
            M DT  VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FVF FRT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    1 MNDT--VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.863e-36
Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   91 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 444
            AVT+RTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY+  D   + VF F+THFGGGK+TGF LIYD+VE  K FEPK+RL+R GL    +  RKQ KE+KNR KK RGV
Sbjct:   23 AVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGV 139          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 76/123 (61.79%), Postives = 96/123 (78.05%), Query Frame = 1
Query:   76 MADTKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGV 444
            M DT  VT+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY+   P+ +FVF FRT FGGGK+TGF ++YDS++ AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct:    1 MNDT--VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 1
Query:   91 AVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRG 441
            AVT+RTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y+  + +A+ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 74/120 (61.67%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   85 TKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRG 441
            ++AVT+RTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY+  D   +  F  RTHFGGG+STGF LIYDS E+ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120          
BLAST of FC923458 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 1
Query:   85 TKAVTLRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKFEPKYRLIRNGLDTKVEK-SRKQLKERKNRAKKIRG 441
            ++AVT+RTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY+  D +A+  F  RTH+GGG++TGF LIYD VE  KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120          
The following BLAST results are available for this feature:
BLAST of FC923458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_DICDI1.801e-3966.6740S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_ICTPU6.842e-3966.6740S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_SPOFR1.167e-3867.8340S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_TAKRU1.991e-3865.5740S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA1.863e-3663.5640S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA2.434e-3661.7940S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24_YEAST3.178e-3666.9540S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24B_SCHPO4.151e-3661.6740S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24A_SCHPO3.514e-3560.0040S ribosomal protein S24-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC31705C06EF StrClemenN Citrus clementina cDNA clone C31705C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923458 ID=FC923458; Name=FC923458; organism=Citrus clementina; type=EST; length=677bp
GATAGCATTCCAGTCCAAACGCGCCACAGAGCAAAGGAGTAAGCGAAGCG
GTCGAGGGAGAAAGAGATATCGTGCATGGCGGATACTAAGGCAGTGACTT
TACGTACGAGGAAGTTCATGACTAACCGTCTTCTGTCTAGGAAACAATTC
GTCATTGACGTTTTGCATCCCGGAAGAGCAAATGTTTCCAAGGCGGAGTT
GAAGGAGAAGCTGGCGAGGATGTATGAAGTTAAGGATCCAAATGCTATCT
TTGTTTTCAAGTTCAGAACCCATTTTGGAGGAGGAAAGTCCACTGGTTTC
GGTTTGATTTATGATTCTGTTGAGAATGCAAAGAAGTTTGAGCCAAAGTA
CAGGCTAATTCGGAATGGATTGGATACGAAGGTAGAGAAATCAAGAAAGC
AGTTGAAGGAAAGAAAGAACAGAGCCAAGAAGATACGAGGAGTAAAGAAG
ACAAAGGCCAGTGATGCTGCAAAGAAGAAGTGAAGCCTTTTGGGATTTTC
TGGTTATGCAACTCCACATGCAAGGAGTTTTCTCTTGGAGCAGCTTTCTG
CCCCTATTATTTTCTTTTACCGTTTTTGTAGTAAAAGTAAAACTAGTTTC
AGAACTTTAATTTCTAGCTTTAGTTGATGTTTGACTTGAGGTGATAGTGA
TGATATATAGAGCCGATTTTTGCATGC
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