FC923462

Overview
NameFC923462
Unique NameFC923462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_PONAB (Serine--pyruvate aminotransferase OS=Pongo abelii GN=AGXT PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 61/193 (31.61%), Postives = 89/193 (46.11%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLG---TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + + H E++TGV   L    +L   Y+   L LVD V S+      MD+ GID+  +GSQK  + P G  ++  S KA +   S+  K    + D K    F+        + +T  I  LY LR +L LI E+GLEN   +HR         ++A GL+   +       TVT V VP   +  +IV
Sbjct:  146 HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVVSVGGTPVYMDQQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPIISLYSLRESLALIAEQGLENSWRKHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIV 336          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_HUMAN (Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 60/193 (31.09%), Postives = 89/193 (46.11%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLG---TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + + H E++TGV   L    +L   Y+   L LVD V+S+      MD  GID+  +GSQK  + P G  ++  S KA +   S+  K    + D K    F+        + +T  +  LY LR +L LI E+GLEN   +HR         ++A GL+   +       TVT V VP   +  +IV
Sbjct:  146 HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDWRDIV 336          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_MOUSE (Serine--pyruvate aminotransferase, mitochondrial OS=Mus musculus GN=Agxt PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 58/185 (31.35%), Postives = 85/185 (45.95%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW---------PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 534
            H    + +VH E++TGV   L    +L   +R+  L LVD V+S+  +   MD+ GID+  + SQKV + P G+ ++  + KA     + K+  V F    Y     L   W          +T  +  LY LR +L LI E GLEN   RHR         ++  GLK   +  E    T+T V
Sbjct:  168 HKPVLLFLVHGESSTGVVQPLDGFGELC--HRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSF----YTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAERGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTV 346          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: AGX1_YEAST (Alanine--glyoxylate aminotransferase 1 OS=Saccharomyces cerevisiae GN=AGX1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   19 AICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPK----ALEASKTAKSVRVFFD----WKDYIKFYNLGT-FWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRL 444
            A+ + H +T+T V ++L  + + + +      F+VD V SI   +F  DEWG+D ALT SQK    P G+ I   S +    AL  SK    V  +F     W   ++ Y  G   +  TP +QL+  L  AL  I EEGL    + HR +
Sbjct:  140 AVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG-HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREM 289          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_RABIT (Serine--pyruvate aminotransferase OS=Oryctolagus cuniculus GN=AGXT PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.773e-13
Identity = 57/194 (29.38%), Postives = 92/194 (47.42%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNL------GTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + + H E++TGV   L    +L   Y+   L LVD V+S+      MD+ GIDV  +GSQK  + P G  ++  S KA ++   A+  + F  + D     N+         + +T  +  ++ LR +L L+ E+GLE   +RHR + +     ++  GL+   +       TVT VIVP      +IV
Sbjct:  146 HKPVLLFLTHGESSTGVLQPLDGFGELCHRYK--CLLLVDSVASLGGAPIYMDQQGIDVLYSGSQKALNAPPGTSLISFSDKA-KSKIYARKTKPFSFYMDVQLLANIWGCDGKPRMYHHTTPVIGIFALRESLALLVEQGLEKSWQRHREVAQHLYRRLQELGLQLFVKDPALRLPTVTTVIVPASYRWRDIV 336          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_CALJA (Serine--pyruvate aminotransferase, mitochondrial OS=Callithrix jacchus GN=AGXT PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 57/193 (29.53%), Postives = 87/193 (45.08%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLG---TFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIV 570
            H    + + H E+++GV   L    +L   Y+   L LVD V+S+      MD+ GID+  +GSQKV + P G  ++  S  A     S+  K    + D K     +        + +T  +  LY LR  L L+ E+GLEN   +HR         ++A GL+   +       TVT V VP   +  +IV
Sbjct:  168 HKPVLLFLTHGESSSGVLQPLDGFGELCHRYK--CLLLVDSVASLGGAPLYMDQQGIDILYSGSQKVLNAPPGTSLLSFSDTAKNKIYSRKTKPSSFYLDVKYLANLWGCDGQPRMYHHTTPVVSLYSLREGLALLSEQGLENSWRKHREAAAYLHGRLQALGLRLFVKDPALRLPTVTTVAVPTGYDWRDIV 358          
BLAST of FC923462 vs. ExPASy Swiss-Prot
Match: SPYA_DICDI (Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 55/183 (30.05%), Postives = 82/183 (44.81%), Query Frame = 1
Query:    7 HTIKAICIVHNETATGVTNNLSKVRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKVPSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFW-----------------------PYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLK 486
            H    + +V  ET+TGV   +  V +L  +Y    L +VD V+++  +   +D+W ID   TG+QK  S P G+  +  S  A     T K+     +W  Y+    LG +W                        +T    LLY LR AL L+ EEGL+NV +RH+         +E+ GLK
Sbjct:  142 HKPSLLTLVFGETSTGVKQQMEGVGELCKKYN--CLLMVDCVAALGGVPVFVDDWKIDACYTGTQKCLSGPPGISPLTFSNAACHKIATRKTPVA--NW--YLDCNLLGGYWCPEFNLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDNVWKRHQDAAILLYAGLESLGLK 318          
The following BLAST results are available for this feature:
BLAST of FC923462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SPYA_PONAB1.603e-1431.61Serine--pyruvate aminotransferase OS=Pongo abelii ... [more]
SPYA_HUMAN2.094e-1431.09Serine--pyruvate aminotransferase OS=Homo sapiens ... [more]
SPYA_MOUSE1.039e-1331.35Serine--pyruvate aminotransferase, mitochondrial O... [more]
AGX1_YEAST1.039e-1333.77Alanine--glyoxylate aminotransferase 1 OS=Saccharo... [more]
SPYA_RABIT1.773e-1329.38Serine--pyruvate aminotransferase OS=Oryctolagus c... [more]
SPYA_CALJA3.950e-1329.53Serine--pyruvate aminotransferase, mitochondrial O... [more]
SPYA_DICDI9.728e-1230.05Serine--pyruvate aminotransferase OS=Dictyostelium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31705C11EF StrClemenN Citrus clementina cDNA clone C31705C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923462 ID=FC923462; Name=FC923462; organism=Citrus clementina; type=EST; length=692bp
ACTGCACACACTATCAAGGCCATTTGCATTGTTCATAACGAGACAGCGAC
CGGAGTTACCAACAACTTGTCTAAAGTGAGAAAACTTCTTGATGAATACA
GGCACCCGGCTCTTTTTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATC
GATTTCCGTATGGATGAATGGGGCATAGATGTGGCTCTAACTGGCTCTCA
GAAAGTTCCTTCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCA
AAGCTCTAGAGGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGAT
TGGAAAGACTACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATAC
CCCTTCCATCCAACTGCTGTATGGGCTGCGAGCAGCTTTGGATCTGATTT
TTGAGGAAGGGCTTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAA
GCAACCAGGCTTGCGGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAA
AGAAGAATGGTTCAGTGACACCGTGACTGCTGTGATTGTTCCTCCACATA
TCAATAGTTCAGAAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGC
TTAGGTCTGGGCCTTAACAAGTTGCTGGTAAAGTATTTAGAATCGGGCAT
CTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCT
back to top