FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_HUMAN (Actin-related protein 2 OS=Homo sapiens GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_CHICK (Actin-related protein 2 OS=Gallus gallus GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_BOVIN (Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2B_DANRE (Actin-related protein 2-B OS=Danio rerio GN=actr2b PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.798e-23
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 RKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2B_XENLA (Actin-related protein 2-B OS=Xenopus laevis GN=actr2-B PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 KKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2A_XENLA (Actin-related protein 2-A OS=Xenopus laevis GN=actr2-A PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 KKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPVIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2A_DANRE (Actin-related protein 2-A OS=Danio rerio GN=actr2a PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.461e-23
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            + VVVCDNGTG+VKCG+AG NFP  +FP +VGRP++R    +   E+KD +VG  A +LR  L+V+YP+ NGIV+NW+DM
Sbjct:    6 KKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTAKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.215e-22
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDMG 393
            R V+V DNGTG+VKCG+AG NFP  +FP +VGRP++R  + +   E+KD +VG     LR  LD++YP++NGIV+NW+DMG
Sbjct:    6 RKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMG 86          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_CAEEL (Actin-related protein 2 OS=Caenorhabditis elegans GN=arx-2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.596e-21
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  151 RNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            R V+V DNGTG+VKCG+AG NFP  +FP +VGRP++R  + +   E+KD +VG     LR  LD++YP++NGIV+NW+DM
Sbjct:    6 RKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.327e-19
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  142 MDNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEE-SLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            MD  N +V D GTG+VK G AGENFP+  FP +VGRP+LR EE + +   LKD ++G  A ++R  L +SYP+ NGI++NW DM
Sbjct:    1 MDPHNPIVLDQGTGFVKIGRAGENFPDYTFPSIVGRPILRAEERASVATPLKDIMIGDEASEVRSYLQISYPMENGIIKNWTDM 84          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ARP2_HUMAN3.798e-2357.50Actin-related protein 2 OS=Homo sapiens GN=ACTR2 P... [more]
ARP2_CHICK3.798e-2357.50Actin-related protein 2 OS=Gallus gallus GN=ACTR2 ... [more]
ARP2_BOVIN3.798e-2357.50Actin-related protein 2 OS=Bos taurus GN=ACTR2 PE=... [more]
ARP2B_DANRE3.798e-2357.50Actin-related protein 2-B OS=Danio rerio GN=actr2b... [more]
ARP2B_XENLA8.461e-2356.25Actin-related protein 2-B OS=Xenopus laevis GN=act... [more]
ARP2A_XENLA8.461e-2356.25Actin-related protein 2-A OS=Xenopus laevis GN=act... [more]
ARP2A_DANRE8.461e-2356.25Actin-related protein 2-A OS=Danio rerio GN=actr2a... [more]
ARP2_CAEBR3.215e-2254.32Actin-related protein 2 OS=Caenorhabditis briggsae... [more]
ARP2_CAEEL1.596e-2153.75Actin-related protein 2 OS=Caenorhabditis elegans ... [more]
ARP2_YEAST3.327e-1952.38Actin-related protein 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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