FC923490

Overview
NameFC923490
Unique NameFC923490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length394
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  160 VVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +V DNGTG+VK G+A +NFP   FP +VGRP+LR EE     ++KD +VG  A  +R  L V YP+ NGI++++E+M
Sbjct:    6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEM 82          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++  + KDT VG  A   R  L + YP+ +G+V NW+DM
Sbjct:    6 DESVAIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHRGVMVGMDEKDTFVGDEAQARRGILSLKYPIEHGVVSNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT8_ARATH (Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D+   +VCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++    KD  VG  A   R  L + YP+ +G+V NW+DM
Sbjct:    5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACT2_ARATH (Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D+   +VCDNGTG VK GFAG++ P +VFP VVGRP  R+   ++    KD  VG  A   R  L + YP+ +G+V NW+DM
Sbjct:    5 DDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRP--RHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +++  +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    6 EDQTAIVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 85          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_RAT (Actin, alpha skeletal muscle OS=Rattus norvegicus GN=Acta1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_RABIT (Actin, alpha skeletal muscle OS=Oryctolagus cuniculus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_PONAB (Actin, alpha skeletal muscle OS=Pongo abelii GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_PIG (Actin, alpha skeletal muscle OS=Sus scrofa GN=ACTA1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_OREMO (Actin, alpha skeletal muscle OS=Oreochromis mossambicus GN=acta1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84          
The following BLAST results are available for this feature:
BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323
Match NameE-valueIdentityDescription
ARP2_SCHPO3.443e-1649.35Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ACT5_ARATH3.443e-1648.78Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT8_ARATH1.709e-1547.56Actin-8 OS=Arabidopsis thaliana GN=ACT8 PE=1 SV=2[more]
ACT2_ARATH1.709e-1547.56Actin-2 OS=Arabidopsis thaliana GN=ACT2 PE=1 SV=1[more]
ACTM_MOLOC3.807e-1543.90Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACTS_RAT4.972e-1545.12Actin, alpha skeletal muscle OS=Rattus norvegicus ... [more]
ACTS_RABIT4.972e-1545.12Actin, alpha skeletal muscle OS=Oryctolagus cunicu... [more]
ACTS_PONAB4.972e-1545.12Actin, alpha skeletal muscle OS=Pongo abelii GN=AC... [more]
ACTS_PIG4.972e-1545.12Actin, alpha skeletal muscle OS=Sus scrofa GN=ACTA... [more]
ACTS_OREMO4.972e-1545.12Actin, alpha skeletal muscle OS=Oreochromis mossam... [more]

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Properties
Property NameValue
Genbank descriptionC31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC
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