FC923490 | Citrus Genome Database

Overview


Name	FC923490
Unique Name	FC923490
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	394

Libraries


Library Name	Type
StrClemenN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_MOUSE (Actin, alpha skeletal muscle OS=Mus musculus GN=Acta1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_HUMAN (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_CHICK (Actin, alpha skeletal muscle OS=Gallus gallus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_BOVIN (Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTSB_TAKRU (Actin, alpha skeletal muscle B OS=Takifugu rubripes GN=acta1b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            D    +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    5 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 84

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTN_STYCL (Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +++  +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    6 EDQTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 85

[Close]

BLAST of FC923490 vs. ExPASy Swiss-Prot
Match: ACTM_STYCL (Actin, muscle OS=Styela clava PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.972e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1

Query:  145 DNRNVVVCDNGTGYVKCGFAGENFPNSVFPCVVGRPMLRYEESLMEQELKDTIVGAAALDLRHQLDVSYPVNNGIVQNWEDM 390
            +++  +VCDNG+G VK GFAG++ P +VFP +VGRP  R++  ++    KD+ VG  A   R  L + YP+ +GI+ NW+DM
Sbjct:    6 EDQTAIVCDNGSGLVKSGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 85

The following BLAST results are available for this feature:

BLAST of FC923490 vs. ExPASy Swiss-Prot

BLAST of FC923490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 323


Match Name	E-value	Identity	Description
ACTS_MOUSE	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Mus musculus GN=Ac...	[more]
ACTS_HUMAN	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Homo sapiens GN=AC...	[more]
ACTS_CYPCA	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Cyprinus carpio GN...	[more]
ACTS_CHICK	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Gallus gallus GN=A...	[more]
ACTS_BOVIN	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA...	[more]
ACTS_ATRMM	4.972e-15	45.12	Actin, alpha skeletal muscle OS=Atractaspis microl...	[more]
ACTSB_TAKRU	4.972e-15	45.12	Actin, alpha skeletal muscle B OS=Takifugu rubripe...	[more]
ACTSA_TAKRU	4.972e-15	45.12	Actin, alpha skeletal muscle A OS=Takifugu rubripe...	[more]
ACTN_STYCL	4.972e-15	43.90	Actin, muscle OS=Styela clava GN=TB12 PE=2 SV=1	[more]
ACTM_STYCL	4.972e-15	43.90	Actin, muscle OS=Styela clava PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C31705F04EF StrClemenN Citrus clementina cDNA clone C31705F04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC923490 ID=FC923490; Name=FC923490; organism=Citrus clementina; type=EST; length=394bp
GATATTTCGCGTAGCGTAACGAATACTTTGCTGCATTTAGAAGCTCCTCC
GGTTGAAGGAAAGCGGTTAGATGAAGAAAGCAGCTACTAATCAGCAACAC
TCCCACTTACTCCTCCGCTTGGGCAACAGCATCACCGTGTAATGGACAAC
AGAAACGTCGTCGTTTGCGACAATGGCACTGGGTATGTCAAGTGCGGATT
CGCAGGGGAAAATTTTCCTAACTCTGTGTTCCCATGTGTTGTGGGAAGGC
CAATGCTACGCTACGAAGAATCACTCATGGAACAAGAGCTCAAGGATACT
ATTGTTGGAGCTGCAGCTTTAGACTTGCGGCATCAACTGGATGTATCTTA
TCCTGTTAATAATGGTATAGTGCAAAACTGGGAGGATATGGGTC